PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB07G32200.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Dof
Protein Properties Length: 489aa    MW: 51666.5 Da    PI: 6.237
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB07G32200.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof1252.3e-39116175261
        zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                   ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rn+PvG+grrk+k+s
  OB07G32200.1 116 PDKILPCPRCNSMDTKFCYYNNYNINQPRHFCKSCQRYWTAGGSMRNIPVGAGRRKSKSS 175
                   7899*****************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074785.0E-31113173IPR003851Zinc finger, Dof-type
PfamPF027014.0E-32118174IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.733120174IPR003851Zinc finger, Dof-type
PROSITE patternPS013610122158IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MAAPLVGSCP CSSSVPMDLA AGAASHRSPD SHVAPPPHPP EMDSCEDAGE MRISEEKPCA  60
DQELDTEQTN SSSLNSSSEC ENQTPSNDEM AGSESKSEAA KTEGDGSSGE KVLKKPDKIL  120
PCPRCNSMDT KFCYYNNYNI NQPRHFCKSC QRYWTAGGSM RNIPVGAGRR KSKSSTANCR  180
SILIPGSSLA APAGDASVYQ VSINGNQKAT SVKFGPDSPL CNSMTSVLKI GEQGKNAKPT  240
STEEPETQTC KAPATTSDSP RNETVSGHQN GLVGHSGVTP MHPIPCFPGP PFVYPWTPGW  300
NGIPAMAAPV CPAPTDPANS SDGGSTGNVQ WSMPPVMPVP GYCGPPIPFP VMPSSVWPFF  360
SPWPNGAWSS PWLGPSCSVP ASSPTSTSTA CSDNNGSPVL GKHSRDSKPQ GDDKVEKNLW  420
IPKTLRIDDP DEAAKSSIWT TLGIEPGDRG MFRPFQSKAG TREQISGAAR VLQANPAALS  480
RSHSFQETT
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB07G32200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0658160.0AK065816.1 Oryza sativa Japonica Group cDNA clone:J013041J16, full insert sequence.
GenBankAK1040950.0AK104095.1 Oryza sativa Japonica Group cDNA clone:001-032-E07, full insert sequence.
GenBankAY2244300.0AY224430.1 Oryza sativa (japonica cultivar-group) isolate 20587 AOBP-like protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006658977.10.0PREDICTED: cyclic dof factor 1-like isoform X1
TrEMBLJ3MP880.0J3MP88_ORYBR; Uncharacterized protein
STRINGOB07G32200.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143438116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39660.23e-74cycling DOF factor 2