PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OB07G31840.1 | ||||||||
Common Name | LOC102709015 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 226aa MW: 25158.2 Da PI: 7.9695 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 31.5 | 3.9e-10 | 21 | 68 | 5 | 52 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52 kr++r NR +A rs +RK +i eLe+kv++L++e ++L +l OB07G31840.1 21 KRAKRILANRQSAARSKERKARYITELERKVQTLQTEATTLSAQLTLF 68 9****************************************9988765 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.5E-14 | 17 | 81 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.599 | 19 | 82 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 4.5E-11 | 21 | 72 | No hit | No description |
Pfam | PF00170 | 5.7E-9 | 21 | 65 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 1.5E-10 | 21 | 75 | No hit | No description |
CDD | cd14703 | 1.07E-19 | 22 | 71 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 226 aa Download sequence Send to blast |
MEAKKAMSSE QLAELAAIDP KRAKRILANR QSAARSKERK ARYITELERK VQTLQTEATT 60 LSAQLTLFQR DTTGLSAENA ELKIRLQAME QQAQLRDALN DALKQEVERL KIATGEMTKS 120 NEAYNTGMQQ VPYNSSFFQL SEQHTVQHHS GVQQLQHQFQ QPHPSVPSHQ MLSHPNSLSD 180 MMQQDSLGRL QGLDIGKGQV AVKSEAEVIV KSEGSSISAG ESNNTF |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269|PubMed:14704272}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00303 | DAP | Transfer from AT2G40620 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | OB07G31840.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK102562 | 0.0 | AK102562.1 Oryza sativa Japonica Group cDNA clone:J033097I23, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006658967.2 | 1e-165 | PREDICTED: transcription factor RF2b-like | ||||
Swissprot | Q6S4P4 | 1e-112 | RF2B_ORYSJ; Transcription factor RF2b | ||||
TrEMBL | J3MP52 | 1e-164 | J3MP52_ORYBR; Uncharacterized protein | ||||
STRING | OB07G31840.1 | 1e-164 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2683 | 36 | 83 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G06850.1 | 2e-72 | basic leucine-zipper 52 |
Link Out ? help Back to Top | |
---|---|
Entrez Gene | 102709015 |
Publications ? help Back to Top | |||
---|---|---|---|
|