PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB07G29420.1

Common Name

LOC102707982

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 613aa MW: 67015.7 Da PI: 4.2983

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB07G29420.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13	0.00031	103	121	2	20
EETTTTEEESSHHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrHi 20 kC Cg+ Fs++s+L +H+ OB07G29420.1 103 KCWSCGQAFSSNSELCSHL 121 7*****************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.67E-35	26	165	No hit	No description
Pfam	PF12756	1.9E-7	49	124	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	49	70	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	8.787	102	127	IPR007087	Zinc finger, C2H2
PROSITE profile	PS51678	72.536	246	567	IPR025799	Protein arginine N-methyltransferase
Gene3D	G3DSA:3.40.50.150	2.2E-38	246	406	IPR029063	S-adenosyl-L-methionine-dependent methyltransferase
SuperFamily	SSF53335	3.92E-62	252	560	IPR029063	S-adenosyl-L-methionine-dependent methyltransferase
CDD	cd02440	7.64E-12	287	406	No hit	No description
Pfam	PF13649	5.3E-12	288	403	No hit	No description
Gene3D	G3DSA:2.70.160.11	3.2E-41	410	595	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006479	Biological Process	protein methylation
GO:0005829	Cellular Component	cytosol
GO:0008168	Molecular Function	methyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 613 aa Download sequence Send to blast
MATRAPELPP KQERLGEEYE DEEDEEEEEG WDDWESDGDD AAGGGGLLCL FCGERFDSES 60 SLFSHCASEH RFDFYRVVRE TGMDFYGCIK LINFVRSKVA ENKCWSCGQA FSSNSELCSH 120 LHSSEIPQVE GQFPWGDDVY LKPFMEDDSL LHSLSVFDDD EEEEGCGMPV GRGECSAGNG 180 SLAESRESLL NSIIDDGSDV IGRFEKACTI ESAAGECSGS LAQEPSDKQL KIARASATAR 240 GIKSVDDSYF GSYSSFGIHR EMLGDKVRTE AYRNALLGNP SLMSRATVLD VGCGTGILSL 300 FAAKAGASRV IAVDGSAKMV AVATEVAKNN GFLYDENVEM EQKRDSQVIS VVHTKAEELN 360 HKTQVPSNSF DVLVSEWMGY CLLYESMLSS VLYARDHFLK PGGAILPDTA TIFGAVFGKG 420 GTSLPFWENV YGFDMSCIGK EVTGNSARFP VVDILASEDI VTETAILHSF DLATMKENEM 480 DFTSSFELRL SESGASQSGA TWCYGIVLWF DTGFTKRFCK EKPVNLSTSP FSTPTHWSQT 540 IFTFEEPIAM TKEGSVVGSS APVGTDECPA VLIRSRISIV RASEHRSIDI SIETTGIGSD 600 GQKRSWPVQI FNL

Sequence ? help Back to Top

Protein Sequence Length: 613 aa Download sequence Send to blast

MATRAPELPP KQERLGEEYE DEEDEEEEEG WDDWESDGDD AAGGGGLLCL FCGERFDSES  60
SLFSHCASEH RFDFYRVVRE TGMDFYGCIK LINFVRSKVA ENKCWSCGQA FSSNSELCSH  120
LHSSEIPQVE GQFPWGDDVY LKPFMEDDSL LHSLSVFDDD EEEEGCGMPV GRGECSAGNG  180
SLAESRESLL NSIIDDGSDV IGRFEKACTI ESAAGECSGS LAQEPSDKQL KIARASATAR  240
GIKSVDDSYF GSYSSFGIHR EMLGDKVRTE AYRNALLGNP SLMSRATVLD VGCGTGILSL  300
FAAKAGASRV IAVDGSAKMV AVATEVAKNN GFLYDENVEM EQKRDSQVIS VVHTKAEELN  360
HKTQVPSNSF DVLVSEWMGY CLLYESMLSS VLYARDHFLK PGGAILPDTA TIFGAVFGKG  420
GTSLPFWENV YGFDMSCIGK EVTGNSARFP VVDILASEDI VTETAILHSF DLATMKENEM  480
DFTSSFELRL SESGASQSGA TWCYGIVLWF DTGFTKRFCK EKPVNLSTSP FSTPTHWSQT  540
IFTFEEPIAM TKEGSVVGSS APVGTDECPA VLIRSRISIV RASEHRSIDI SIETTGIGSD  600
GQKRSWPVQI FNL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6nt2_A	6e-66	208	559	9	334	Protein arginine N-methyltransferase 1
6nt2_B	6e-66	208	559	9	334	Protein arginine N-methyltransferase 1
6nt2_C	6e-66	208	559	9	334	Protein arginine N-methyltransferase 1
6nt2_D	6e-66	208	559	9	334	Protein arginine N-methyltransferase 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Methylates (mono and asymmetric dimethylation) the guanidino nitrogens of arginyl residues in some proteins. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB07G29420.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK105489	0.0	AK105489.1 Oryza sativa Japonica Group cDNA clone:001-127-B11, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006658026.1	0.0	PREDICTED: probable protein arginine N-methyltransferase 3
Swissprot	A3BMN9	0.0	ANM3_ORYSJ; Probable protein arginine N-methyltransferase 3
TrEMBL	J3MNG0	0.0	J3MNG0_ORYBR; Uncharacterized protein
STRING	OB07G29420.1	0.0	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7895	9	9

Link Out ? help Back to Top
Entrez Gene	102707982

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]