PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB07G28520.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 536aa    MW: 59250.8 Da    PI: 4.5473
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB07G28520.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.51.5e-133579348
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +W++eEd+ l   ++++G+++W+ Ia+     +t+ qc+ rw++yl
     OB07G28520.1 35 SWSAEEDDVLRTQIALHGTDNWTIIAAQYK-DKTARQCRRRWYNYL 79
                     6****************************9.**************7 PP
2Myb_DNA-binding42.11.9e-1385128146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g W+ eEd+ll +a k lG++ W+ Ia+ +  gRt++ +k+r+ +
     OB07G28520.1  85 KGGWSHEEDLLLCEAQKVLGNK-WTEIAKVVS-GRTDNAVKNRFST 128
                      688*******************.*********.**********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.8232883IPR017930Myb domain
SMARTSM007171.5E-123281IPR001005SANT/Myb domain
SuperFamilySSF466893.71E-2632126IPR009057Homeodomain-like
CDDcd001671.25E-123579No hitNo description
Gene3DG3DSA:1.10.10.603.7E-183686IPR009057Homeodomain-like
PfamPF139214.3E-143695No hitNo description
SMARTSM007177.1E-1384132IPR001005SANT/Myb domain
PROSITE profilePS5129417.31684134IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.6E-1987133IPR009057Homeodomain-like
CDDcd001674.98E-988129No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009553Biological Processembryo sac development
GO:0010052Biological Processguard cell differentiation
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 536 aa     Download sequence    Send to blast
MATGPDLSSP AAAAAAEAPP SSSSASAKKD RHIVSWSAEE DDVLRTQIAL HGTDNWTIIA  60
AQYKDKTARQ CRRRWYNYLN SECKKGGWSH EEDLLLCEAQ KVLGNKWTEI AKVVSGRTDN  120
AVKNRFSTLC KRRAKDDDLF KENGQSCSSA NAKRVLAQTE CHTSGAAAPP IKQMRACNSD  180
FKENIVPNMR LLGQDKSTQQ DSRQPLATVC QNKHGDVNMM DTQNLVAKTA AKQLFGGEQN  240
CVKREGNFLN KDDPKIATLL QQADLLCSLA TKINTENTSQ SMDEAWQQLQ HHLDKKDDND  300
MSESSMSGMA SLLEDLDDLI VDPYENEEED DQKLREQTEQ IDVQNEQNPS QTSMEVTSEM  360
TPNNKMEDCL NDKNMEDNNM EPCPGADIPT SENLNEATIE DSLLHCVEYS SPLHIIIHAK  420
ADADIAASEN LSEVLEQCIK SVSPAHTTTQ AEADTETPAS EKSCEAIKCN KPLCMEFTSP  480
AHTVPTFLPY ADDMPTPNFT ASERNFLLSV LELTSPGSRP DTSQQPSCKR ALLNSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-283613310107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB07G28520.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0634260.0AK063426.1 Oryza sativa Japonica Group cDNA clone:001-115-D02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006658854.10.0PREDICTED: myb-like protein Q, partial
TrEMBLJ3MN700.0J3MN70_ORYBR; Uncharacterized protein
STRINGOB07G28520.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89033847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14350.25e-84MYB family protein