PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB07G28190.1
Common NameLOC102717539
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CAMTA
Protein Properties Length: 1027aa    MW: 114680 Da    PI: 5.584
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB07G28190.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1180.52e-56211372118
          CG-1   2 lkekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrc 98 
                   l+ ++rwl+++ei++iL n++k++++ e++++p sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+hekLKvg+v+vl+cyYah+een++fqrr+
  OB07G28190.1  21 LEAQNRWLRPTEICHILSNHKKFSIAPEPPNKPASGSLFLFDRKILRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSVDVLHCYYAHGEENENFQRRT 117
                   5679********************************************************************************************* PP

          CG-1  99 ywlLeeelekivlvhylevk 118
                   ywlLee l++ivlvhylevk
  OB07G28190.1 118 YWLLEEGLTNIVLVHYLEVK 137
                   *****************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143780.22316142IPR005559CG-1 DNA-binding domain
SMARTSM010762.7E-7519137IPR005559CG-1 DNA-binding domain
PfamPF038594.8E-5022136IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.101.6E-5445532IPR013783Immunoglobulin-like fold
PfamPF018331.1E-4446519IPR002909IPT domain
SuperFamilySSF812964.72E-17446532IPR014756Immunoglobulin E-set
SuperFamilySSF484034.66E-16633739IPR020683Ankyrin repeat-containing domain
CDDcd002041.59E-12639733No hitNo description
Gene3DG3DSA:1.25.40.203.8E-17639739IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029716.812645739IPR020683Ankyrin repeat-containing domain
PfamPF127961.6E-6651739IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500889.618678710IPR002110Ankyrin repeat
SMARTSM000152.1852874IPR000048IQ motif, EF-hand binding site
PfamPF006120.0055854873IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.682854882IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525402.28E-7854903IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.011875897IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.359876900IPR000048IQ motif, EF-hand binding site
PfamPF006122.6E-4878897IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1027 aa     Download sequence    Send to blast
MAEVRKYGLP NQPPDIPQIL LEAQNRWLRP TEICHILSNH KKFSIAPEPP NKPASGSLFL  60
FDRKILRYFR KDGHNWRKKK DGKTVKEAHE KLKVGSVDVL HCYYAHGEEN ENFQRRTYWL  120
LEEGLTNIVL VHYLEVKGGK QSFSCSKEAE ESAGLSNADS PVYSNSFASQ SQVASQSMDA  180
ESPISGQISE YEDAETDSCR ASSRYPPFIE MQQPVDGVMM DNMLGVSAPS TSVNNPDVGY  240
HGKMQNATDN SYNHFAAHYD IPGVFNEAGA EVRGVSKTLH DSLRFGEPYP EYPAEFMEPA  300
FYSSIAAMES NNLDDNSRLE TFMSEALYTN NLTQKEADAL SAAGITSSQV ENNTYTDGIR  360
YPLLKQSSLD IFKIEPDGLK KFDSFSRWMS SELPEVADLD IKSSSDAFWS NTETVNVADG  420
TSIPINEQLD AFAVSPSLSQ DQLFSIIDVS PSYACTGSRT KVLVTGTFLA NKEHVENCKW  480
SCMFGDVEVP AEVLAQGALR CYTPVHISGR VPFYVTCSNR VACSEVREFE FRDSDVRQMD  540
TSDPRTAGIS EMHLHIRLEK LLSLGPDDYE KYVMSDGNEK SEIIDTINSL MLDDKWSSQA  600
VPSDEKEIST ARDQNIEKMV KEKLYCWLIH KIHDEDKGPN VLGKEGQGVI HLVAALGYDW  660
AIKPIITAGV KVNFRDSRGW TALHWAASCG RERTVGALIA NGAESGLLTD PTPQFSSGRT  720
AADLASENGH KGIGGFLAES ALTSHLSALT LKESKDGNVK EICDIGATED FAESSSAQLS  780
YGDSQAESLK DSLSAVRKST QAAARIFQAF RVESFHRKKV VEYGDDDCGL SDERTLSLVS  840
IKNTKPGQND GLPHSAAVRI QNKFRGWKGR KEFMIIRQKI VKIQAHVRGH QVRKSFRKIV  900
WSVGIVEKII LRWRRKRRGL RGFQPVKQLE GPSQIQQLEG PSHIQPAKEE EEDEYDYLKD  960
GRKQAEGRLQ RALARVKSMT QYPEAREQYS RLANCVTELK DPQAMIQDEM QSDMAHGGDF  1020
MDDLEGL
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB07G28190.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1084610.0AK108461.1 Oryza sativa Japonica Group cDNA clone:002-143-D08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015695237.10.0PREDICTED: calmodulin-binding transcription activator 1-like isoform X1
TrEMBLJ3MN370.0J3MN37_ORYBR; Uncharacterized protein
STRINGOB07G28190.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60838140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09410.20.0ethylene induced calmodulin binding protein