PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB07G27970.1

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

HB-other

Protein Properties

Length: 1195aa MW: 135465 Da PI: 7.281

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB07G27970.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	44.4	2.8e-14	59	111	5	57
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 t+ ++ q++ Le+++ + +yp+ e ++e A+++gLt +qV++WF+ rR ke++ OB07G27970.1 59 TKKSPLQIQMLERFYSEVQYPKSEYIAEYATSVGLTYSQVRIWFKERRRKERR 111 567899*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.1E-14	51	112	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.625	52	112	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.75E-12	53	113	IPR009057	Homeodomain-like
SMART	SM00389	6.3E-13	54	116	IPR001356	Homeobox domain
Pfam	PF00046	1.2E-11	59	111	IPR001356	Homeobox domain
CDD	cd00086	2.75E-7	59	102	No hit	No description
SMART	SM00571	0.0017	418	477	IPR018501	DDT domain
PROSITE profile	PS50827	10.183	418	477	IPR018501	DDT domain
Pfam	PF02791	6.2E-6	420	472	IPR018501	DDT domain
Pfam	PF15612	2.1E-5	698	729	IPR028942	WHIM1 domain
Pfam	PF15613	4.5E-10	821	892	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1195 aa Download sequence Send to blast
MGSVIGAAWV MGVGVGILWV VSFSVWLVEF EGQISIWLEL VWVVMVANSL EAKRENTGTK 60 KSPLQIQMLE RFYSEVQYPK SEYIAEYATS VGLTYSQVRI WFKERRRKER REMESLGAHM 120 EKQLNARSNG FRCNSSSSRF ASFSQSTIDH HVDNGMSFIG EKHALRPQVL FPKDYILRKV 180 FRKDGPPLGS EFDFLPQSAP RHLRDTTDYH FYQNRRVMKK RKIVELNTHR SSVPCEDSGR 240 VRKHGVGKGL MTVWQAMYSH SGKIQDGSNF IDETGCLRSL RPLDDYGRIE DCDDGKLIQK 300 KVLARKKVDK RSRPPSNRRK VQCSRVTAPK KHPPVECHLS VDESQSSELR TNQVTLVDDE 360 ELELSELQAG PNPLRCSVHR SSSGRHGCPL CKDLLARFPP PSVKMKQPFS TRPWESSPEM 420 VKKLFQVVRF IYNRFGYMDV HPFTFDELAQ AFHDKDSMLL GEVHVNLLKL LFVNTGRGSS 480 DVFVPRSSKD CRFLSFLNFV REQEFDLNFW IKSLNSLTWV EILRQVLVAS GFGSKHHMLN 540 RDFFNKVLEK NQMVKYGLRP RTLKGELFAL LSKKGSRGLK ISELAKSPEI VDLNIPSMEV 600 DQLIYSTLSS DITLFEKITP SAYRLRVDPR IKGKEDSGSD TEDSGSVDDD SDASSGADES 660 EGSHETSFSE HEHRITRRKR KNGHENVNRC SEIDESYSGE RWLLGLMEGE YSDLSIDEKL 720 DCLVALMDVV SGADTVPRLE EPPRVLPSIP RAQPHVSGGK IKKSTRNICQ SSDECFNTSG 780 SMHGLDSSMY QQSGSLRSHD YVAYSGRNDS STGVAHQPQV VLLGSDRRYN NYWLFLGPCS 840 ADDPGHHRVY FESSEDGHWE VIDSPQELLS LLASLDGRGI REAYLLASMK NRQTCLFEAM 900 KKHCEDRSVV GPEIPSETSH SETSSGDGAS PKLSSGDGAS PTSDIDYASV PTDLVDNIVN 960 PSSAISIEVG RRGDEKVLKW ERSQAFDKWI WTNFYSCLTA VKCGKKSFKE SLVRCESCHD 1020 LYWRDEKHCR ICHSTFEVSF DLEERYAIHV ATCRDPEDVY DVPNHKVLPS QLQALKAAIH 1080 AIEARMPEAA FAGLWMKSSH KLWIKRLRRT SSLAELLQVL VDFVGAMDED WLYKSSSSVS 1140 FSSYLDDITI YFQTMPQTTS AVALWVVKLD ALITPYLERA DSDRALSKDS LQTRT

Sequence ? help Back to Top

Protein Sequence Length: 1195 aa Download sequence Send to blast

MGSVIGAAWV MGVGVGILWV VSFSVWLVEF EGQISIWLEL VWVVMVANSL EAKRENTGTK  60
KSPLQIQMLE RFYSEVQYPK SEYIAEYATS VGLTYSQVRI WFKERRRKER REMESLGAHM  120
EKQLNARSNG FRCNSSSSRF ASFSQSTIDH HVDNGMSFIG EKHALRPQVL FPKDYILRKV  180
FRKDGPPLGS EFDFLPQSAP RHLRDTTDYH FYQNRRVMKK RKIVELNTHR SSVPCEDSGR  240
VRKHGVGKGL MTVWQAMYSH SGKIQDGSNF IDETGCLRSL RPLDDYGRIE DCDDGKLIQK  300
KVLARKKVDK RSRPPSNRRK VQCSRVTAPK KHPPVECHLS VDESQSSELR TNQVTLVDDE  360
ELELSELQAG PNPLRCSVHR SSSGRHGCPL CKDLLARFPP PSVKMKQPFS TRPWESSPEM  420
VKKLFQVVRF IYNRFGYMDV HPFTFDELAQ AFHDKDSMLL GEVHVNLLKL LFVNTGRGSS  480
DVFVPRSSKD CRFLSFLNFV REQEFDLNFW IKSLNSLTWV EILRQVLVAS GFGSKHHMLN  540
RDFFNKVLEK NQMVKYGLRP RTLKGELFAL LSKKGSRGLK ISELAKSPEI VDLNIPSMEV  600
DQLIYSTLSS DITLFEKITP SAYRLRVDPR IKGKEDSGSD TEDSGSVDDD SDASSGADES  660
EGSHETSFSE HEHRITRRKR KNGHENVNRC SEIDESYSGE RWLLGLMEGE YSDLSIDEKL  720
DCLVALMDVV SGADTVPRLE EPPRVLPSIP RAQPHVSGGK IKKSTRNICQ SSDECFNTSG  780
SMHGLDSSMY QQSGSLRSHD YVAYSGRNDS STGVAHQPQV VLLGSDRRYN NYWLFLGPCS  840
ADDPGHHRVY FESSEDGHWE VIDSPQELLS LLASLDGRGI REAYLLASMK NRQTCLFEAM  900
KKHCEDRSVV GPEIPSETSH SETSSGDGAS PKLSSGDGAS PTSDIDYASV PTDLVDNIVN  960
PSSAISIEVG RRGDEKVLKW ERSQAFDKWI WTNFYSCLTA VKCGKKSFKE SLVRCESCHD  1020
LYWRDEKHCR ICHSTFEVSF DLEERYAIHV ATCRDPEDVY DVPNHKVLPS QLQALKAAIH  1080
AIEARMPEAA FAGLWMKSSH KLWIKRLRRT SSLAELLQVL VDFVGAMDED WLYKSSSSVS  1140
FSSYLDDITI YFQTMPQTTS AVALWVVKLD ALITPYLERA DSDRALSKDS LQTRT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	104	111	RRRKERRE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB07G27970.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006657968.1	0.0	PREDICTED: homeobox-DDT domain protein RLT3
Refseq	XP_015695304.1	0.0	PREDICTED: homeobox-DDT domain protein RLT3
TrEMBL	J3MN15	0.0	J3MN15_ORYBR; Uncharacterized protein
STRING	OB07G27970.1	0.0	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4556	33	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12750.1	0.0	Homeodomain-like transcriptional regulator