PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB07G27820.1
Common NameLOC102712829
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 316aa    MW: 34373.8 Da    PI: 4.3845
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB07G27820.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.11.3e-19104154155
           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                   ++y+G+r+++ +g+W+AeIrdps+     r++lg+fgtaeeAa a++  +++++g
  OB07G27820.1 104 TRYRGIRQRP-WGKWAAEIRDPSK---GVRVWLGTFGTAEEAAMAYDVEARRIRG 154
                   68********.**********965...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.20E-30104164No hitNo description
PfamPF008472.5E-12104154IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-31105163IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-22105163IPR016177DNA-binding domain
PROSITE profilePS5103223.578105162IPR001471AP2/ERF domain
SMARTSM003805.8E-37105168IPR001471AP2/ERF domain
PRINTSPR003673.1E-11106117IPR001471AP2/ERF domain
PRINTSPR003673.1E-11128144IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009873Biological Processethylene-activated signaling pathway
GO:0034059Biological Processresponse to anoxia
GO:0071456Biological Processcellular response to hypoxia
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MCGGAILGDL YSPARRTVHA GDLWADSGSK GKNGGDSLKR KESSWDFDID GDEDDFEADF  60
EEFEDDYDDD VVFGHDDQES DMNGLKLAGL SAAKLGLGSR KRKTRYRGIR QRPWGKWAAE  120
IRDPSKGVRV WLGTFGTAEE AAMAYDVEAR RIRGKKAKVN FPDAAAPKRP RRAAAKPPQQ  180
QKANSSSPPE SVNVSSDGSK SNRVSSAGSS TDSAAAAIDD VKLELPPETD PLPMAAAWLD  240
TFELNDLDGS RCKDTNGAVA DDFAYYEPSY MMQLGYFEAS AYDSIDALFG GEAVQDGVNI  300
GGLWSFDDMP MEFRAC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-21106162663ATERF1
3gcc_A5e-21106162663ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
198103SRKRKT
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00230DAPTransfer from AT1G72360Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB07G27820.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0610471e-147AK061047.1 Oryza sativa Japonica Group cDNA clone:006-205-F01, full insert sequence.
GenBankAK0670601e-147AK067060.1 Oryza sativa Japonica Group cDNA clone:J013090P08, full insert sequence.
GenBankAK1093601e-147AK109360.2 Oryza sativa Japonica Group cDNA clone:006-206-B03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006657959.10.0PREDICTED: ethylene-responsive transcription factor ERF073-like
RefseqXP_015694870.10.0PREDICTED: ethylene-responsive transcription factor ERF073-like
TrEMBLJ3MN000.0J3MN00_ORYBR; Uncharacterized protein
STRINGOB07G27820.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145602123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.13e-32ethylene-responsive element binding protein