PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB07G27730.1
Common NameLOC102711276
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family FAR1
Protein Properties Length: 714aa    MW: 81531.8 Da    PI: 7.7991
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB07G27730.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA43.35.1e-144884135
          GATA  1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35
                  C  Cg +   Tp++Rrgpdg++tLCnaCG+ yrk ++
  OB07G27730.1 48 CLRCGISGnaTPHMRRGPDGPRTLCNACGIAYRKGKM 84
                  5667777777************************876 PP
2FAR183.14.8e-26118205191
          FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                   +fYn+YA +vGFsvrks+s+ks++n  ++ rtfvCs+eg+++++k+   +++++r  tr+gC a+l +k + + k++vt+++ +HnH+lap
  OB07G27730.1 118 EFYNKYAGHVGFSVRKSTSHKSSENI-TKVRTFVCSREGYNRDKKSL--EAKKPRLDTRIGCPARLIIKVTPECKYRVTDFKADHNHQLAP 205
                   6*********************6666.899*************9988..99*************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004013.7E-64197IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.9E-104494No hitNo description
Gene3DG3DSA:3.30.50.103.9E-114786IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.16E-74785No hitNo description
PfamPF003201.2E-114883IPR000679Zinc finger, GATA-type
PfamPF031012.1E-23118205IPR004330FAR1 DNA binding domain
PfamPF105515.1E-25328422IPR018289MULE transposase domain
PROSITE profilePS509669.817596643IPR007527Zinc finger, SWIM-type
PfamPF044346.7E-5614642IPR007527Zinc finger, SWIM-type
SMARTSM005755.1E-6618645IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 714 aa     Download sequence    Send to blast
MMHMLVAPDV GGGGEMQPYG GGAAAPLEQE LELHRGNADD GLEGHVRCLR CGISGNATPH  60
MRRGPDGPRT LCNACGIAYR KGKMRRMIEA EPPIDEASLA KLVPDVGMEF ESEEKAYEFY  120
NKYAGHVGFS VRKSTSHKSS ENITKVRTFV CSREGYNRDK KSLEAKKPRL DTRIGCPARL  180
IIKVTPECKY RVTDFKADHN HQLAPPSTMH MLRSQRILTE LQSGEAELSD DSVVTPTTKA  240
TGDLVVRQIG FLRSISLLPA DYKNYLRSKR MKAMQVGDGG AILKYLQTMQ MENPSFFYTM  300
QIDEDDKLTN FFWADPKSRE DFNHFGDVLC LDTTYKINGY GRPLSLFLGV NHHKQTIIFG  360
AAMLYDESFE SYRWLFESFK IAMHGKQPAV ALVDQSIPLT SAMAAAWPNT TQRTCAWHVY  420
QNSLKHLNHV FQGSKTFAKD FSRCVFGYEE EEEFVFAWRS MLEKYDLRHN EWLSKLFEER  480
ERWALAYERH IFCADIISAL QAESFSSVLK KFLSPQLDLL SFFKHYERAV DEHRYAELQA  540
DFQASQSYPR IPPAKMLKQA AHTYTPVVFE IFRKEFELFM DSVLFNCGEA GTTSEYKVAP  600
SEKTKEHFVR FDSSDCSCIC TCRKFEFMGI PCCHMLKVLD YRNIKELPQR YLLKRWRRTA  660
KSTNEENQVY AANGNGSSLN SIVPPANHHG LQGFSAMIQD TPANMHENSF HRSS
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB07G27730.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0663170.0AK066317.1 Oryza sativa Japonica Group cDNA clone:J013064I12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006657954.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLJ3MMZ10.0J3MMZ1_ORYBR; Uncharacterized protein
STRINGOB07G27730.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-120FAR1-related sequence 5