PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB07G26660.1
Common NameLOC102718758
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 446aa    MW: 46472.4 Da    PI: 6.4086
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB07G26660.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.18.2e-07111131323
                   ETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                   C  Cgk Fs++ +L+ H+r+H
  OB07G26660.1 111 CRECGKLFSTWRSLVGHMRRH 131
                   ********************9 PP
2zf-C2H216.13.1e-05311333123
                   EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                   y+Cp Cgk+Fs+   L  H  +H
  OB07G26660.1 311 YECPGCGKVFSSYQALGGHRASH 333
                   99***********9999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.931638IPR007087Zinc finger, C2H2
SMARTSM003550.951638IPR015880Zinc finger, C2H2-like
PfamPF139128.9E-51638IPR007087Zinc finger, C2H2
SuperFamilySSF576671.29E-91738No hitNo description
PROSITE patternPS0002801838IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.4E-41838IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.29E-9104131No hitNo description
SMARTSM003550.019109131IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.658109136IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.3E-5111131IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280111131IPR007087Zinc finger, C2H2
PfamPF139120.0015111131IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.9E-4310334IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.2E-11310335IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.616311338IPR007087Zinc finger, C2H2
SMARTSM003550.031311333IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280313333IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MDAVAVLSGG AGSGMRRCRV CGKGFSCGRS LGGHMRSHVT FGDAVAEADG GGGGGGGGGD  60
GDGEVNGGRC SNGVVGYGLR ENPKKTRRLS EFDEEDEVVE EGGDGGELMA CRECGKLFST  120
WRSLVGHMRR HASGGRDRGD EDDEFDGPEA EEEEEVMVAP AAVTVIAAPP RRRRRSMRVA  180
APAPAPPPVP GGGVEKEQED VALCLLMLSR DTGMWRSPVK AVEPFEMVEQ KKKKATAKQP  240
PPIPRNGYGY NSDEDSALLQ CGDAKTNNTG RGGGDVAKCR KRRASYYAPN SISPKQQQQQ  300
RAAAPAKRTR YECPGCGKVF SSYQALGGHR ASHKRINTSC SAPKAAAATA TAPEPSSETY  360
ASLGDGTLSP SASPDSVATA IGNSKTNKSA AEKFGGQQVT GACSDDGELY ASSSGNVELE  420
LEQHSPPAAT AFLDLNFPPA SSSEVA
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB07G26660.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0038401e-89AP003840.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1634_B10.
GenBankAP0039151e-89AP003915.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1579_C03.
GenBankAP0149631e-89AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006658771.10.0PREDICTED: uncharacterized protein LOC102718758
TrEMBLJ3MMN40.0J3MMN4_ORYBR; Uncharacterized protein
STRINGOB07G26660.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38613573
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.12e-08C2H2-like zinc finger protein