PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB07G25780.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 527aa    MW: 56158.9 Da    PI: 4.8064
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB07G25780.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.000195576223
                  EETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                   C+ Cgk++  + +Lk H +t+
  OB07G25780.1 55 ACQRCGKRYAVQADLKAHSKTC 76
                  6*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.1E-54275IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.41E-54998No hitNo description
PROSITE profilePS501578.7255482IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 527 aa     Download sequence    Send to blast
MSTSQLAIVV AYRALLPVYV CPEPNCVHHA PTRALGDLTG IKKHFCRKHG EKRWACQRCG  60
KRYAVQADLK AHSKTCGTRE YRCDCGTLFT RRDSFVTHRA FCGALVEETG RVLAVPAPPS  120
PRPPELEAEE NADKDKEEEE KKELEENEDS PVAEVDESPH SQPVVEAPQQ CAPSPPPPIL  180
QEHQQPVVAV VPNADEQEVV AETTVIAKQE VEDDRGEDTC FHEVDRFKDA ELEDSNLLDN  240
DTPMLPCFLP SPSEAIGTDG SSTSCGTGSS VTNSIAPATT TSTFAGLFAS VTTSSTPQSR  300
SLRDLIGVDP TFLCLAIGAP SSLFPQTNAS DPCSFAPPPA PHMSATALLQ KAAEVGASQS  360
SSSFLKEFGL APSTSSSPPS KLSQGRFTGN TTPSQPPQGR FMDNAPPTKL PHRMFTDNSV  420
QQWHHRSNQQ MEMEPGPMLS GGLGLGLTYD SGNSVLPDLM MGPSTLYGPK PATLDFLGLG  480
IGGTMGGSTA NGGLPALMVG GELDMGSAQA PAPWEEAKRK TNGHTIL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-2950112365Zinc finger protein JACKDAW
5b3h_F1e-2950112365Zinc finger protein JACKDAW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB07G25780.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006658739.10.0PREDICTED: protein indeterminate-domain 1-like, partial
TrEMBLJ3MME60.0J3MME6_ORYBR; Uncharacterized protein
STRINGOB07G25780.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118292836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.23e-54C2H2 family protein