PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB07G24510.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family FAR1
Protein Properties Length: 1694aa    MW: 189420 Da    PI: 7.5643
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB07G24510.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3581.7e-18370469198
                   EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                   f+k l+ sd+++ grlvlpkk+ae++   ++++e+  l+++d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++  e++lv
  OB07G24510.1 370 FEKMLSASDAGRIGRLVLPKKCAEAYfpAISQAEGLPLKVQDATGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRID-PEGKLV 464
                   89**************************777788889***************9989999999***9.********************987.777777 PP

                   EEEE- CS
            B3  94 vkvfr 98 
                   +++++
  OB07G24510.1 465 MGFRK 469
                   77776 PP
2FAR184.51.7e-26908995190
          FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                   +fYn YA++vGF vr+s+  ++++n  it+rtfvCs+eg+re+++ + ++++ +r+etr+gC a+++++++ +gk+++t+++ +HnH+la
  OB07G24510.1 908 EFYNVYAEMVGFFVRRSTLWTTSKNI-ITRRTFVCSREGFREKKRGT-KEAKCPRPETRIGCPASMTIRLNANGKYRLTEFVPNHNHQLA 995
                   6********************97766.****************9988.99**************************************97 PP
3FAR181.12e-2510371123189
          FAR1    1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89  
                    +fY+ YA ++GF+vr+++++ + +n  it+r fvCskeg+re+++ + +  +++r+etrtgC a++++++ ++gk++vt++++ HnH+l
  OB07G24510.1 1037 EFYSMYAGKIGFNVRRASMTMNAENI-ITRRMFVCSKEGFREKKRGA-KGVKKPRPETRTGCPACMVIRLASNGKYHVTEFVTFHNHPL 1123
                    6*****************99995555.****************9998.999************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS0002805171IPR007087Zinc finger, C2H2
Gene3DG3DSA:2.40.330.105.2E-29367471IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.36E-19367469IPR015300DNA-binding pseudobarrel domain
CDDcd100171.38E-21368469No hitNo description
PROSITE profilePS5086311.251370471IPR003340B3 DNA binding domain
PfamPF023621.7E-15370469IPR003340B3 DNA binding domain
SMARTSM010195.7E-21370470IPR003340B3 DNA binding domain
PfamPF031015.6E-24908995IPR004330FAR1 DNA binding domain
PfamPF031011.1E-2110371123IPR004330FAR1 DNA binding domain
PfamPF105517.5E-2212401334IPR018289MULE transposase domain
PROSITE profilePS5096610.90515081555IPR007527Zinc finger, SWIM-type
PfamPF044345.2E-815081554IPR007527Zinc finger, SWIM-type
SMARTSM005753.0E-715301557IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1694 aa     Download sequence    Send to blast
MAPTGSTWSD RYVVVISVEY AGVLCKFWSH SFEHGGFCET FHLDVAGWRN CESCGKRLHC  60
GCIVSVHAFV HLDAGGVECV MCARKSHAAV APNQIWSSSM HMAQVADRKD NFVKSWRPPA  120
GQYASQWRQN NMWGVQTIQS DLQQRLAYEF DRPSGSEKLL PGRTFIQAHE KKFDDMHDRP  180
TTPAAMNQIM RERYANGHTQ HNSLDPTYAY TIYHREGSNP NLHDHGHHGG ENDHLSARKG  240
VAPDPCSSVS TTFKLDSHHP SILKDDPTAL PPGLSPNFSS ANGPKDHIRI GPQQQQQMAS  300
SSLQKQFYSH TVIDNDFQAQ LRNGRPRMDA KARSQLLPRY WPRITDQELQ HLSGEYPKFS  360
ISNSVITPLF EKMLSASDAG RIGRLVLPKK CAEAYFPAIS QAEGLPLKVQ DATGKEWVFQ  420
FRFWPNNNSR MYVLEGVTPC IQSMQLQAGD TVTFSRIDPE GKLVMGFRKA TNLSAEQDQP  480
TKPANGVPPP PEANIKVSAP NCSPNTAVPR LDKVNTEGKS SSPVEQATAC KIDKGALSQK  540
EGPGTSSSSP GPVKRKATSV GPKIKRFRMD SEESMELKIT WEEAQELLRP PPKAPSIVVV  600
DGHEFEEYEE PPILGRRTHF VTDQSGSSCD SAQEINTEEL AEMIPIKPGA AKKSKGKVDT  660
DNIDVSDGLD TLANLAILGE VRRRFRTLMM RREKRQRSEK DSETPRRKET GQSSEPAPQA  720
GSAATQTSTT SSPQKADTNG DGPEDMAIEN KRTTSPIKNQ IDLNSQPERE DEQSPKSDAD  780
LANEGASIGF HWREKARAIG STLLGIGRDK QKHGLPNQKS LRPVNVAINL ADDPRLTQQP  840
CPGHVAILPP HTPWAVHVPI PPAPLSPANP QQNGDVVVAD VSPAIDNCDE KMLPKVDMLF  900
DGENEAYEFY NVYAEMVGFF VRRSTLWTTS KNIITRRTFV CSREGFREKK RGTKEAKCPR  960
PETRIGCPAS MTIRLNANGK YRLTEFVPNH NHQLATASTM HMLKAKKIRL KARAVRENLV  1020
DDTVRTPEFE SEDEAYEFYS MYAGKIGFNV RRASMTMNAE NIITRRMFVC SKEGFREKKR  1080
GAKGVKKPRP ETRTGCPACM VIRLASNGKY HVTEFVTFHN HPLGAAVPCD LVATSQSTET  1140
GQDDGMDVVD GSADANIHKQ NLISDNTMAA SLESRINKRF KCTKVPHNGD IGATLEYLQK  1200
MQHDKPSFFF AVKSDDDGNL TNFLWADSKS IMDFVHFGDV VCLDSAYALQ GYGRPLALFT  1260
GLNHHKQTII FAAALLYDES AEAFRWLFDA FKMAMNGTQP KTLLTDRSAA ISEGAAASWP  1320
ATAHRYCVWQ IYQNALQQLS QAFHGSRTLE YSFKKCLFDC EDEPEFLTAW REMLEKYDLE  1380
DNKWLADLFS LKEKWALPYG RDAFCADMKS VQQKESLGIE LKKHLSLEFG LLSFFQQFER  1440
VLCDRRSAEL QADVEASQST KKPPPMRVLR QACNVYTPSA FKMFEREFEL YMDCMLYNCG  1500
EMGTVSEYKV TIEDNQMDHF VKFDSLNSRL SCSCKGFEFI GIPCRHMLKV LDTRNIKDLP  1560
PQYILRRWRK DAKSGSSNGS YSFPFDSDPQ LAQTKRYNLL CRIFSIAAAR AATSVDTSAY  1620
MENQSSILMD QVEQALETRP PDMAAIIGAH SNQTQNPIDN IITGLHNHTN FINGSADGSL  1680
TFPFTLGAGA LDYH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5yzy_C2e-613424721125B3 domain-containing transcription repressor VAL1
5yzz_C2e-613424721125B3 domain-containing transcription repressor VAL1
5z00_C2e-613424721125B3 domain-containing transcription repressor VAL1
5z00_G2e-613424721125B3 domain-containing transcription repressor VAL1
5z00_K2e-613424721125B3 domain-containing transcription repressor VAL1
5z00_M2e-613424721125B3 domain-containing transcription repressor VAL1
6j9a_A2e-613424722126B3 domain-containing transcription repressor VAL1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB07G24510.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0675750.0AK067575.1 Oryza sativa Japonica Group cDNA clone:J013110M05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLJ3MM190.0J3MM19_ORYBR; Uncharacterized protein
STRINGOB07G24510.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74903647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-104FAR1-related sequence 5