PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB07G20960.1
Common NameLOC102700542
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family FAR1
Protein Properties Length: 642aa    MW: 72376.1 Da    PI: 7.8098
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB07G20960.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR171.61.8e-2212111290
          FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.............tekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 
                   fYn+YA++vGFsvr+s++k++   g i++r fvCs+eg +++ k++             + ++r   + trtgC+a++++k +   +++v+k+  eH
  OB07G20960.1  12 FYNRYAEHVGFSVRRSYKKRK--RGVIVSRIFVCSREGVSDRAKHEsvaivsnnastgaSGTHRPGPPPTRTGCQARMVIKITPCRTYRVAKFFAEH 106
                   9*************9976665..999**************9999999*******999987788888999**************************** PP

          FAR1  86 nHela 90 
                   nH+la
  OB07G20960.1 107 NHPLA 111
                   ***97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.9E-1912111IPR004330FAR1 DNA binding domain
PfamPF105511.6E-23200294IPR018289MULE transposase domain
PROSITE profilePS5096610.2468515IPR007527Zinc finger, SWIM-type
PfamPF044347.7E-6476514IPR007527Zinc finger, SWIM-type
SMARTSM005752.0E-6490517IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 642 aa     Download sequence    Send to blast
MHFETEDDAY AFYNRYAEHV GFSVRRSYKK RKRGVIVSRI FVCSREGVSD RAKHESVAIV  60
SNNASTGASG THRPGPPPTR TGCQARMVIK ITPCRTYRVA KFFAEHNHPL ANPDSVHKLR  120
SHKMRARAHE LGAGELHRRK QGKGVQLGDV GAALQYLEEL QVGNPSVYYA VGMGPDGKSA  180
ANFFWADANS MIDFRSFGDV VCFDTTYGLN GYGRPFALFV GVDNHKQMLV FGAALLYDES  240
IESLKWVFKA FADAMRGRQP DTILIDERPE CAIAASEVWP RSSHCTSVWH IYHNSKRNLK  300
QVFEGSKSFA NALNHCLFEC DDEMEFLSAW EKLIEKHDVG ENEWLSKLFL EKEKWALPYW  360
KALFSADVLT TLRKDNMIND IKRELSEQED TLQFLRRYET MLEEHRSKKL QADVDGSQVT  420
LPIPSLRMLK QASSAYTPEA FKMFQGEFEA YMNCMSFPCG GLGTISEYKI TLDERPSESI  480
VKFDALDGSA TCSCRKFESV GIQCCHVLKV LDLKNIKELP EQYILRRWRK DARSIRMGEE  540
PSGGSSCSMR SPSEVRFNSM CRFLSLIASR AARSEEATSY IESQSSDLLK HLDDILQTGY  600
PDIGNHALAS SSQAISFVGN QLPDHTSQAR GVPQTKNGLM GV
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB07G20960.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0039560.0AP003956.5 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1457_D07.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015695267.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLJ3ML140.0J3ML14_ORYBR; Uncharacterized protein
STRINGOB07G20960.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-84FAR1-related sequence 5