PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB07G20740.1
Common NameLOC102721568
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CAMTA
Protein Properties Length: 927aa    MW: 103848 Da    PI: 8.1613
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB07G20740.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1166.83.5e-52311463117
          CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrc 98 
                    e  +rw +++ei+aiL n++++++++++ ++p sg+++Ly+rk+vr+frkDG++wkkkkdg+tv+E+hekLK+g+ e +++yYa++e++p+f rrc
  OB07G20740.1  31 AEaAARWFRPNEIYAILSNHARFKIHAQPVDKPVSGTVVLYDRKVVRNFRKDGHNWKKKKDGRTVQEAHEKLKIGNEERVHVYYARGEDDPNFFRRC 127
                   45589******************************************************************************************** PP

          CG-1  99 ywlLeeelekivlvhylev 117
                   ywlL+++le+ivlvhy+++
  OB07G20740.1 128 YWLLDKDLERIVLVHYRHT 146
                   *****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143774.81926152IPR005559CG-1 DNA-binding domain
SMARTSM010761.8E-6229147IPR005559CG-1 DNA-binding domain
PfamPF038594.4E-4533145IPR005559CG-1 DNA-binding domain
SuperFamilySSF812961.27E-10375461IPR014756Immunoglobulin E-set
SuperFamilySSF484031.71E-17547674IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.2E-17558674IPR020683Ankyrin repeat-containing domain
CDDcd002042.77E-15560668No hitNo description
PROSITE profilePS5029717.794576680IPR020683Ankyrin repeat-containing domain
PfamPF127966.6E-8582672IPR020683Ankyrin repeat-containing domain
SMARTSM002481.1E-5609638IPR002110Ankyrin repeat
PROSITE profilePS5008811.674609641IPR002110Ankyrin repeat
SMARTSM00248580648677IPR002110Ankyrin repeat
SuperFamilySSF525405.84E-8725826IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS500966.54760786IPR000048IQ motif, EF-hand binding site
SMARTSM000151.5775797IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.785776803IPR000048IQ motif, EF-hand binding site
PfamPF006120.002778796IPR000048IQ motif, EF-hand binding site
SMARTSM000150.016798820IPR000048IQ motif, EF-hand binding site
PROSITE profilePS5009610.274799823IPR000048IQ motif, EF-hand binding site
PfamPF006120.0092801820IPR000048IQ motif, EF-hand binding site
SMARTSM000152.4881903IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.066883911IPR000048IQ motif, EF-hand binding site
PfamPF006120.044884903IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 927 aa     Download sequence    Send to blast
MAGGGGWDPL VDSEIHGFLT YADLNYEKLV AEAAARWFRP NEIYAILSNH ARFKIHAQPV  60
DKPVSGTVVL YDRKVVRNFR KDGHNWKKKK DGRTVQEAHE KLKIGNEERV HVYYARGEDD  120
PNFFRRCYWL LDKDLERIVL VHYRHTAEEN AMAPPNSEPE VADVPTVNLI HYTSPLTSAD  180
STSAHAELSV PEEINSHGGI SASSETGNHD SSLEEFWANL LESSIKNDPK IDAAACGGPF  240
ASSQEVNNGP KNSGVNTFKT SMASNAIPSF NVASEVYSTN HGLNQVNEDH FGALKHQGDQ  300
TQSLLMSDVD SQSDQFTRSL VKSPMDGKVP VPNDVPARQN SLGLWKYLDD ESTGLGDNPS  360
LVTQSFRPVT NGLFKITEIS PEWAYSTETT KVVVVGNFYE QYKHLTGSAM YGVFGDQCVA  420
GDIVQTGVYR FMIGPHTPGQ VDFYLTLDGK TPISEICSFT YHVMHGSSLE GRLPSSEDEH  480
KRLNLQMQMR LARLLFATNK KKIAPKLLVE GSKVSNLISA SPEKEWMDLW NILSDSEVTN  540
VPATENLLEL VLRNRLQEWL VEMVMEGHKS TGRDDLGQGA IHLCSFLGYT WAIRLFSLSG  600
FSLDFRDSSG WTALHWAAYY GRERMVAALL SAGANPSLVT DPTSQSPAGL TAADLAARQG  660
YDGLAAYLAE KGLTAHFEAM SLSKDAEQSP SKTRLTKVQS EKFENLSEQE LCLKESLAAY  720
RNAADAASNI QAALRERTLK LQTKAIQLAN PELEASEIVA AMKIQHAFRN YNRKKAMRAA  780
ARIQSHFRTW KMRRNFINMR RQVIRIQAAY RGHQVRRQYR KVIWSVGIVE KAILRWRKKR  840
KGLRGIASGM PVVMTVDAEA EPASTAEEDF FQAGRQQAED RFNRSVVRVQ ALFRSYKAQQ  900
EYRRMKVTHE EAKLEFSEGQ LGAARRR
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds calmodulin in a calcium-dependent manner in vitro. Binds to the DNA consensus sequence 5'-T[AC]CG[CT]GT[GT][GT][GT][GT]T[GT]CG-3'. {ECO:0000269|PubMed:16192280}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00435DAPTransfer from AT4G16150Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB07G20740.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0709760.0AK070976.1 Oryza sativa Japonica Group cDNA clone:J023073E17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006658566.10.0PREDICTED: calmodulin-binding transcription activator 6-like
SwissprotQ7XHR20.0CBT_ORYSJ; Calmodulin-binding transcription activator CBT
TrEMBLJ3MKZ20.0J3MKZ2_ORYBR; Uncharacterized protein
STRINGOB07G20740.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP98312933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16940.10.0calmodulin binding;transcription regulators