PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB07G19720.1
Common NameLOC102702953
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRF
Protein Properties Length: 265aa    MW: 27795.9 Da    PI: 4.6927
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB07G19720.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC73.81.8e-23176220145
           WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                   ++epgrCrRtDGKkWRC+r++++++k+CErH+hrgr+r  + ++e
  OB07G19720.1 176 EPEPGRCRRTDGKKWRCWRNAIANEKYCERHMHRGRKRPVQLVVE 220
                   69************************************9998875 PP
2QLQ54.34.1e-19110145237
           QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                   aFTa+Qlq+L++Q  +y+y+aa++PvP +L+++i+k
  OB07G19720.1 110 AFTAMQLQELEQQSRVYQYMAARVPVPTHLVFPIWK 145
                   8*********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009514.7E-8109145IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166620.922110145IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088806.2E-12110144IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166722.302176220IPR014977WRC domain
PfamPF088791.3E-19177215IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MAAEGEAKKD AANNPPGGGG AGGAGAGEGE SNSSPVTAAV AVGQEGERAD REGEEGKEVE  60
VEEEGGVCRD LVLVEDAVPV EDPEEAAATA ALQEEMKVLV ASVPVGAGAA FTAMQLQELE  120
QQSRVYQYMA ARVPVPTHLV FPIWKSVTGA SSEGAQKYPT LMGLATLCLD FGKNPEPEPG  180
RCRRTDGKKW RCWRNAIANE KYCERHMHRG RKRPVQLVVE DDEPDSTSGS KSASGKATEG  240
GKKTDDKSSS SKKLAVAAPA AVEST
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB07G19720.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0664000.0AK066400.1 Oryza sativa Japonica Group cDNA clone:J013062O07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006657676.10.0PREDICTED: growth-regulating factor 11
SwissprotQ6AWX81e-147GRF11_ORYSJ; Growth-regulating factor 11
TrEMBLJ3MKP00.0J3MKP0_ORYBR; Uncharacterized protein
STRINGOB07G19720.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67353152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.12e-29growth-regulating factor 5
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]