PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB07G18470.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB_related | ||||||||
Protein Properties | Length: 115aa MW: 13332.3 Da PI: 11.4074 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 38.1 | 3.6e-12 | 28 | 67 | 3 | 43 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksr 43 +WT+eEd +l ++ k+ ++W++Iar m+ +R++ +c+ r OB07G18470.1 28 AWTPEEDAQLQRLAKENAFRRWSRIARSMP-RRSARSCRAR 67 7*****************************.********88 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 1.4E-7 | 25 | 74 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 11.404 | 27 | 76 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.79E-16 | 27 | 106 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.55E-6 | 28 | 57 | No hit | No description |
Pfam | PF00249 | 6.2E-11 | 28 | 69 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-14 | 29 | 106 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 115 aa Download sequence Send to blast |
MHQEEMTTPP PLPAPRPRCI VRLRLPPAWT PEEDAQLQRL AKENAFRRWS RIARSMPRRS 60 ARSCRARPHN LARDAYHRPI TAHDDDELLR LHCRLGDRWK EIGRAVYGSA APPAS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB07G18470.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP005200 | 1e-83 | AP005200.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0673E01. | |||
GenBank | AP014963 | 1e-83 | AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015645964.1 | 8e-51 | transcription factor MYB73 | ||||
TrEMBL | J3MKB5 | 2e-76 | J3MKB5_ORYBR; Uncharacterized protein | ||||
STRING | OB07G18470.1 | 3e-77 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12569 | 20 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67300.1 | 2e-08 | myb domain protein r1 |