PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB07G18460.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB_related | ||||||||
Protein Properties | Length: 174aa MW: 19521.6 Da PI: 7.1955 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.1 | 5.6e-15 | 31 | 72 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +WT+eEd ll ++ k+ G ++W++Iar m+ +R++ +c+ rw OB07G18460.1 31 AWTPEEDALLQRLAKENGFRRWSRIARSMP-RRSARSCRARWX 72 7*****************************.***********5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.946 | 24 | 79 | IPR017930 | Myb domain |
SMART | SM00717 | 5.0E-11 | 28 | 77 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.47E-12 | 29 | 72 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 7.1E-14 | 31 | 72 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.4E-14 | 31 | 72 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.44E-8 | 31 | 60 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 174 aa Download sequence Send to blast |
MDQDGDQVVM ASSPPPVARA RCIARLRLPP AWTPEEDALL QRLAKENGFR RWSRIARSMP 60 RRSARSCRAR WXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXRELH 120 RSGFAAAAAA SKEQPADDAD NNMAEGDEES QDTLGFANAL ASSLASCSLR EDSS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB07G18460.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP005200 | 4e-53 | AP005200.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0673E01. | |||
GenBank | AP014963 | 4e-53 | AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012615 | 4e-53 | CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | J3MKB4 | 3e-65 | J3MKB4_ORYBR; Uncharacterized protein | ||||
STRING | OB07G18460.1 | 4e-66 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12569 | 20 | 35 |