PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB07G18450.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB_related | ||||||||
Protein Properties | Length: 64aa MW: 7881.05 Da PI: 12.0783 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24.2 | 7.9e-08 | 13 | 54 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+ +d+ l++++++lG + Wk I r g Rt + rw + OB07G18450.1 13 PFTARDDDELLRLHRRLGDR-WKEIGRVYG--RTSRIMRRRWKEL 54 89****************99.********8..8988889988876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.95E-8 | 1 | 56 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.1E-9 | 3 | 54 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 10.945 | 6 | 59 | IPR017930 | Myb domain |
SMART | SM00717 | 1.4E-4 | 10 | 57 | IPR001005 | SANT/Myb domain |
Pfam | PF13921 | 1.5E-7 | 14 | 56 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 64 aa Download sequence Send to blast |
WPHHLARDLY HRPFTARDDD ELLRLHRRLG DRWKEIGRVY GRTSRIMRRR WKELRRSGFV 60 AAAA |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB07G18450.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC092749 | 2e-46 | AC092749.1 Genomic sequence for Oryza sativa (japonica cultivar-group) cultivar Nipponbare clone OSJNBb0023M11, from chromosome 10, complete sequence. | |||
GenBank | AC123594 | 2e-46 | AC123594.1 Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNAb0078C13, complete sequence. | |||
GenBank | AP014966 | 2e-46 | AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006664837.1 | 5e-31 | PREDICTED: myb-related protein 315-like | ||||
TrEMBL | J3MKB3 | 2e-37 | J3MKB3_ORYBR; Uncharacterized protein | ||||
STRING | OB07G18450.1 | 4e-38 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12569 | 20 | 35 |