PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OB07G18270.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 115aa MW: 13065.9 Da PI: 10.8472 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.9 | 5.6e-09 | 31 | 64 | 3 | 37 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-H CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtl 37 +WT+eEd ll ++ k+ ++W++Iar m R++ OB07G18270.1 31 PWTPEEDALLQRLAKENRFRRWSRIARSMR-LRSA 64 7****************************9.8886 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 7.4E-7 | 22 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.4 | 24 | 66 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-8 | 28 | 64 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.71E-8 | 31 | 64 | No hit | No description |
Pfam | PF00249 | 1.5E-7 | 31 | 64 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 115 aa Download sequence Send to blast |
MDPEVNMASS PPAPAVPRSR FIVRLKLPPA PWTPEEDALL QRLAKENRFR RWSRIARSMR 60 LRSARKEKPA GAEDADNDMV EIDKESWVEP ESQGRLGLAN ALARPDDGRQ PRARL |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | OB07G18270.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015645964.1 | 3e-16 | transcription factor MYB73 | ||||
TrEMBL | J3MK95 | 7e-74 | J3MK95_ORYBR; Uncharacterized protein | ||||
STRING | OB07G18270.1 | 1e-74 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12569 | 20 | 35 |