PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB07G17740.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 621aa    MW: 71849.2 Da    PI: 9.9337
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB07G17740.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.92.1e-07407447346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +WT+eE e++ + v++ G+  Wk+ a+++g  +   ++k+ w+ 
     OB07G17740.1 407 KWTPEEYEKIRRHVEMNGTS-WKSLAEELG--KNQIHLKDTWRR 447
                      8*****************99.********9..778888888875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.079331402IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-5332395IPR009057Homeodomain-like
PROSITE profilePS500904.414334400IPR017877Myb-like domain
PROSITE profilePS512949.582402453IPR017930Myb domain
SMARTSM007170.18404451IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-6405455IPR009057Homeodomain-like
SuperFamilySSF466893.59E-6405455IPR009057Homeodomain-like
PfamPF139217.9E-7408451No hitNo description
PROSITE profilePS500906.435465533IPR017877Myb-like domain
SMARTSM0071735469535IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-4472552IPR009057Homeodomain-like
SuperFamilySSF466899.98E-6513590IPR009057Homeodomain-like
PROSITE profilePS500907.793535588IPR017877Myb-like domain
SMARTSM0071784539590IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 621 aa     Download sequence    Send to blast
MMKQHCSEHV EGGTSKCGVE EDTNIAKDSK VMKKKKRKES KTEMAAHTKD DRAMKEKKKE  60
REAEMAGNGQ VPFGSTAENA GLEHPEVDMG EKEQGTKSKK SKRKHADVEP SADGSPVDEI  120
MTDREKKKRR KERSVQLKEV DQVNMSKVAV KMRGNKKRIN ESDKFNPNLS NSTSTGGDEV  180
GGDGKNRDDK KRKKKDTFTG RNDVGEHDKN DKKRKKKDTF TGRNDVGEHD KNDKKRKKKD  240
TFTGRNDVGE HDKNDKKKVK KDSLTGGDGK NDKKKKKSKE GNCGRKSEKE KAVQSKDKVR  300
RVSFADAVEV FSVNSGEDEE NCKSAESEVV HGKRFTPEEN VTIMEAIKNY IEMKQLGENG  360
LEMIRTSSKH PELRGCWAEI AKSLPHRPLN AIYRRARILL FMSDERKWTP EEYEKIRRHV  420
EMNGTSWKSL AEELGKNQIH LKDTWRRIKP KNLKKVLRCC ISIKRKDSLQ RHWTQDEYQN  480
LFDLVNLDLQ VKADQEINAG NRKWRDNIAW EAISDKLTTR NHKTCCIKWY CQLTSPLVQK  540
GEWADTDDYR LVAALQNDDA VCIEDIDWDN LLDHRSGEIC RKRWNEMVRT IGGHREKPFI  600
EQVEVLSRRY CPEMLDYRRE K
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13237KKKKRK
2125129KKKRR
3125130KKKRRK
4126130KKRRK
5233237KKRKK
6255276KKKVKKDSLTGGDGKNDKKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB07G17740.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0061661e-37AP006166.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:B1435D02.
GenBankAP0149621e-37AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankCP0126141e-37CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006657621.10.0PREDICTED: RNA polymerase I termination factor isoform X1
TrEMBLJ3MK420.0J3MK42_ORYBR; Uncharacterized protein
STRINGOB07G17740.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54052635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.14e-92MYB_related family protein