PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB07G17730.1 | ||||||||
Common Name | LOC107304538 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C2H2 | ||||||||
Protein Properties | Length: 377aa MW: 41423.5 Da PI: 5.105 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.1 | 3.2e-05 | 106 | 127 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +Cp Cgk+F++ ++ H+r+H OB07G17730.1 106 ECPVCGKRFRNDKSMFGHLRSH 127 6*******************99 PP | |||||||
2 | zf-C2H2 | 13.5 | 0.00022 | 257 | 280 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y+C++C++ Fs++ L H+ H OB07G17730.1 257 YTCKHCNEEFSTHQALGGHMAGnH 280 9***************99998666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 0.0048 | 105 | 127 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.034 | 105 | 132 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.1E-4 | 106 | 127 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 8.97E-8 | 106 | 127 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 107 | 127 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 8.97E-8 | 252 | 276 | No hit | No description |
Pfam | PF13912 | 2.2E-6 | 256 | 282 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0076 | 257 | 280 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.18 | 257 | 285 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 259 | 280 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 377 aa Download sequence Send to blast |
MSKCRCILFW PSVVILQAVC CWLVVAGGNS SQQVVVAAAA SGQIGGAPEC LQDPRLSPMS 60 WHARDDLVGD DDDLADHGAA PAQQPEAEAA ADAEAGDVDL DGGEVECPVC GKRFRNDKSM 120 FGHLRSHPNR GYKGATPPLN LSTTPSSSLP AAVDDTLLLL PFRDSSNQSM LSVADVCLST 180 YEKMAACVMA TLRYRYRPRR QLQQPQAQAA AAGAGIGEVG TSSTMEGDVI HRDGRRKGKR 240 KLTKEPLREK ELKRRHYTCK HCNEEFSTHQ ALGGHMAGNH KEKRILKEAQ LARSAMILEQ 300 KQPDMNLGLK EEQPERSRLV LREKQPDVYQ DRVIDQTMDD DWEETEIDGS NAVPVAEEED 360 GHPPFGFDLN VEAPEQE |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 234 | 240 | RRKGKRK |
2 | 234 | 241 | RRKGKRKL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB07G17730.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015694606.1 | 0.0 | PREDICTED: uncharacterized protein LOC107304538 | ||||
TrEMBL | J3MK41 | 0.0 | J3MK41_ORYBR; Uncharacterized protein | ||||
STRING | OB07G17730.1 | 0.0 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13916 | 20 | 28 |
Link Out ? help Back to Top | |
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Entrez Gene | 107304538 |