PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB07G17380.1
Common NameLOC102704904
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 418aa    MW: 44845.2 Da    PI: 6.9273
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB07G17380.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.45.9e-1787133148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT eEde l ++v+ +G + W+ Ia+ ++ gR +kqc++rw ++l
     OB07G17380.1  87 KGVWTREEDEVLRKLVRHHGVRKWAEIAKSLP-GRIGKQCRERWTNHL 133
                      799*****************************.************996 PP

2Myb_DNA-binding44.63.3e-14141183347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       WT++Ed +l++a+k +G+  W+  a+ +  gR ++ +k++w++ 
     OB07G17380.1 141 IWTEDEDNILIEAHKSYGNC-WSVLAKFLH-GRPENAIKNHWNTT 183
                      6*****************99.*********.************87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129428.34382137IPR017930Myb domain
SuperFamilySSF466893.59E-2984180IPR009057Homeodomain-like
SMARTSM007171.2E-1686135IPR001005SANT/Myb domain
PfamPF002499.9E-1687133IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-2689140IPR009057Homeodomain-like
CDDcd001673.99E-1690133No hitNo description
PROSITE profilePS5129416.861138188IPR017930Myb domain
SMARTSM007171.2E-13138186IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.1E-20141186IPR009057Homeodomain-like
PfamPF002492.3E-12142182IPR001005SANT/Myb domain
CDDcd001679.67E-12142182No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MAAGGNSFLN EELAMAANGM SGRFFTGSSH GGVGSIGMPP SSFVMPEEGL AAVGYGDLTS  60
IPVGANMVPQ QQQIHVGGSN GNLGVQKGVW TREEDEVLRK LVRHHGVRKW AEIAKSLPGR  120
IGKQCRERWT NHLQPDIKKD IWTEDEDNIL IEAHKSYGNC WSVLAKFLHG RPENAIKNHW  180
NTTRRRLNSK RQLRKKNGKH GGPSPLEEYI RSCIRDERAH ATRSKTMPTP LPATAEAAGA  240
AFGVVGYGTG QLVGVSATPP LAMQAPDSTA TRGTVTFLDL LNGDSPRPQP ETMNLFHVPA  300
AAEPEPHLPT TGYCLQLDAG GNLYYGRMPP APVPPHEIEL QAQNLSLYHQ PAASFAWSHL  360
ADSGAASNQA SGYYGDAGAG PSGAGAGADN NNVSQMASSE FMMPSEDEAI LDLARWTN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A3e-39871864103MYB PROTO-ONCOGENE PROTEIN
1mse_C3e-39871864103C-Myb DNA-Binding Domain
1msf_C3e-39871864103C-Myb DNA-Binding Domain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB07G17380.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006658469.10.0PREDICTED: myb-related protein Zm1-like
TrEMBLJ3MK060.0J3MK06_ORYBR; Uncharacterized protein
STRINGOB07G17380.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP188233101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.13e-47myb domain protein 98