PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB07G17380.1 | ||||||||
Common Name | LOC102704904 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB | ||||||||
Protein Properties | Length: 418aa MW: 44845.2 Da PI: 6.9273 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.4 | 5.9e-17 | 87 | 133 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT eEde l ++v+ +G + W+ Ia+ ++ gR +kqc++rw ++l OB07G17380.1 87 KGVWTREEDEVLRKLVRHHGVRKWAEIAKSLP-GRIGKQCRERWTNHL 133 799*****************************.************996 PP | |||||||
2 | Myb_DNA-binding | 44.6 | 3.3e-14 | 141 | 183 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 WT++Ed +l++a+k +G+ W+ a+ + gR ++ +k++w++ OB07G17380.1 141 IWTEDEDNILIEAHKSYGNC-WSVLAKFLH-GRPENAIKNHWNTT 183 6*****************99.*********.************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 28.343 | 82 | 137 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.59E-29 | 84 | 180 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-16 | 86 | 135 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.9E-16 | 87 | 133 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-26 | 89 | 140 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.99E-16 | 90 | 133 | No hit | No description |
PROSITE profile | PS51294 | 16.861 | 138 | 188 | IPR017930 | Myb domain |
SMART | SM00717 | 1.2E-13 | 138 | 186 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.1E-20 | 141 | 186 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.3E-12 | 142 | 182 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.67E-12 | 142 | 182 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 418 aa Download sequence Send to blast |
MAAGGNSFLN EELAMAANGM SGRFFTGSSH GGVGSIGMPP SSFVMPEEGL AAVGYGDLTS 60 IPVGANMVPQ QQQIHVGGSN GNLGVQKGVW TREEDEVLRK LVRHHGVRKW AEIAKSLPGR 120 IGKQCRERWT NHLQPDIKKD IWTEDEDNIL IEAHKSYGNC WSVLAKFLHG RPENAIKNHW 180 NTTRRRLNSK RQLRKKNGKH GGPSPLEEYI RSCIRDERAH ATRSKTMPTP LPATAEAAGA 240 AFGVVGYGTG QLVGVSATPP LAMQAPDSTA TRGTVTFLDL LNGDSPRPQP ETMNLFHVPA 300 AAEPEPHLPT TGYCLQLDAG GNLYYGRMPP APVPPHEIEL QAQNLSLYHQ PAASFAWSHL 360 ADSGAASNQA SGYYGDAGAG PSGAGAGADN NNVSQMASSE FMMPSEDEAI LDLARWTN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 3e-39 | 87 | 186 | 4 | 103 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 3e-39 | 87 | 186 | 4 | 103 | C-Myb DNA-Binding Domain |
1msf_C | 3e-39 | 87 | 186 | 4 | 103 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB07G17380.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006658469.1 | 0.0 | PREDICTED: myb-related protein Zm1-like | ||||
TrEMBL | J3MK06 | 0.0 | J3MK06_ORYBR; Uncharacterized protein | ||||
STRING | OB07G17380.1 | 0.0 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1882 | 33 | 101 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18770.1 | 3e-47 | myb domain protein 98 |
Link Out ? help Back to Top | |
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Entrez Gene | 102704904 |