PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB07G17130.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 410aa    MW: 43667.8 Da    PI: 4.4405
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB07G17130.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM73.93.9e-23121451128
           NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgk...dkev 92 
                   lppG+ F+P+d+ lv  yL ++++g++ l+l+ +i e+d +++ Pw+L +++ ++ +e +fF+ ++ k+ +gkr++r +   g+W+ +      +++
  OB07G17130.1  12 LPPGLTFQPRDDVLVGSYLLRRIQGTRpLPLQGAILEADPLSAPPWKLLASF-GRGDEAFFFADARAKNGKGKRQKRtVEGGGFWQGQRAcvdGEKL 107
                   79**********************9987899889**************7554.56789*******************555599**966553323334 PP

           NAM  93 lsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                   l+       e+ + k +L f+   + +  ++ Wvmhey++
  OB07G17130.1 108 LVPggdgVAEVAWRKYMLSFFA--EGEKASSGWVMHEYSV 145
                   4435553334477888899994..3333589*******86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-279164IPR003441NAC domain
PROSITE profilePS5100527.512164IPR003441NAC domain
PfamPF023651.4E-1413145IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MAPGGAVAED ALPPGLTFQP RDDVLVGSYL LRRIQGTRPL PLQGAILEAD PLSAPPWKLL  60
ASFGRGDEAF FFADARAKNG KGKRQKRTVE GGGFWQGQRA CVDGEKLLVP GGDGVAEVAW  120
RKYMLSFFAE GEKASSGWVM HEYSVTAPPD LASSPLRLYR VRFSGHGKKR KREPQPDEEG  180
QALPQSARAA VVVEPAKPPA AMDESSSVVF SQLPDLIALP SEEADATTLP PPPQPLLPPA  240
PAALVRFADD AGGASTDLAS SPLRLYRVRF SGHGKKRKRE PQPDEEGQAL PQSARGGGTC  300
QASCGDGRVF VGGASTDSSM VSTQPPELTV LPLPAEEADA APAPSGMSWP DNQSDYSSSI  360
MDGEPLDWSG YDFPENIDDV LSCIDFTATA DQCSSLDFCL DNLFNDLQAD
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB07G17130.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638590.13e-94uncharacterized protein LOC107275325
TrEMBLJ3MJY10.0J3MJY1_ORYBR; Uncharacterized protein
STRINGOB07G17130.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80222137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.23e-12NAC domain containing protein 47