PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB07G16010.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 250aa    MW: 27800.1 Da    PI: 7.0156
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB07G16010.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.67.1e-142575155
           AP2  1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55
                  s+y+GV+ +k  grW+A+       g    +k+++lg f+++ eAa+a+++a+ +++g
  OB07G16010.1 25 SKYRGVTLHK-CGRWEAR---M---GqllGKKYIYLGLFDSEIEAARAYDRAAIRFNG 75
                  89********.7******...5...334336**********99**********99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.62E-172584IPR016177DNA-binding domain
CDDcd000181.01E-272585No hitNo description
PfamPF008471.7E-92575IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-162683IPR001471AP2/ERF domain
PROSITE profilePS5103216.1072683IPR001471AP2/ERF domain
SMARTSM003804.2E-332689IPR001471AP2/ERF domain
PRINTSPR003677.1E-72738IPR001471AP2/ERF domain
PRINTSPR003677.1E-76585IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MRNWTKEEFV HILRRQSTGF ARGSSKYRGV TLHKCGRWEA RMGQLLGKKY IYLGLFDSEI  60
EAARAYDRAA IRFNGREAVT NFDPSSYDGD VLPETDNEVV DGDIIDLNLR ISQPNVHDLK  120
SDSTLNGFQL HCDSPEASSS VVTQPISPQW PVQPQGTSIA SQHPHLYVSP CPGFFGNLRE  180
VPMEKRPELG PQTFPTWSWQ MQGSPLPLLP TAASSGFSTG TVATADAARL PSSRPHPFAG  240
HHQFYYPPTT
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Together with IDS1, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes. Prevents lemma and palea elongation as well as grain growth. Regulates the transition from spikelet meristem to floral meristem, spikelet meristem determinancy and the floral organ development (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q8H443}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB07G16010.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8319750.0CT831975.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA106E13, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015694575.10.0PREDICTED: AP2-like ethylene-responsive transcription factor TOE3
SwissprotB8B8J21e-169AP23_ORYSI; APETALA2-like protein 3
TrEMBLJ3MJL90.0J3MJL9_ORYBR; Uncharacterized protein
STRINGOB07G16010.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24483890
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.33e-56related to AP2.7