PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB07G15670.1
Common NameLOC102718375
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 268aa    MW: 30125.1 Da    PI: 5.9317
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB07G15670.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM162.91.2e-50151401128
           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 
                   lppGfrFhPtdeelv +yL+++++g++ ++  +i+e+d+y+++Pw+Lp+++  +++ewyfF++rd+ky++g+r++ra+ +gyWkatg dk+vl+  g
  OB07G15670.1  15 LPPGFRFHPTDEELVAHYLCARAAGRPAPV-PIIAELDLYRHDPWELPARALFGRREWYFFTPRDRKYPNGSRPSRAAGAGYWKATGADKPVLH-AG 109
                   79*************************999.88***************87778999**************************************.99 PP

           NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                   ++ g+kk Lvfy+g+ p+g+kt+W+mheyrl
  OB07G15670.1 110 RTLGIKKALVFYSGKPPRGVKTEWIMHEYRL 140
                   9****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.05E-6211167IPR003441NAC domain
PROSITE profilePS5100559.49515167IPR003441NAC domain
PfamPF023653.6E-2616140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MAAMARRDAE AELNLPPGFR FHPTDEELVA HYLCARAAGR PAPVPIIAEL DLYRHDPWEL  60
PARALFGRRE WYFFTPRDRK YPNGSRPSRA AGAGYWKATG ADKPVLHAGR TLGIKKALVF  120
YSGKPPRGVK TEWIMHEYRL ADSAAVAKKK SGTLRLDDWV LCRLYNKKNE WEKMQRQKAE  180
DAAMAAPSHS PGETRTPESE IDNDPFPEMD SPPAFNDAGV PLLPPKEEAH DDDWLMGMSL  240
DDLQGLGSLL QDDDLFELAP AKTEPPFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A6e-9311731174Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB07G15670.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt and cold stresses (PubMed:18813954, PubMed:20632034). Induced by dehydration and methyl jasmonate (PubMed:20632034). {ECO:0000269|PubMed:18813954, ECO:0000269|PubMed:20632034}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015694929.10.0PREDICTED: LOW QUALITY PROTEIN: NAC domain-containing protein 67-like
SwissprotQ7EZT11e-135NAC67_ORYSJ; NAC domain-containing protein 67
TrEMBLJ3MJI50.0J3MJI5_ORYBR; Uncharacterized protein
STRINGOB07G15670.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44143071
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77450.13e-82NAC domain containing protein 32
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Takasaki H, et al.
    The abiotic stress-responsive NAC-type transcription factor OsNAC5 regulates stress-inducible genes and stress tolerance in rice.
    Mol. Genet. Genomics, 2010. 284(3): p. 173-83
    [PMID:20632034]
  3. Ghosh T,Rai M,Tyagi W,Challam C
    Seedling stage low temperature response in tolerant and susceptible rice genotypes suggests role of relative water content and members of OsSNAC gene family.
    Plant Signal Behav, 2016. 11(5): p. e1138192
    [PMID:26829663]
  4. Rahman H,Ramanathan V,Nallathambi J,Duraialagaraja S,Muthurajan R
    Over-expression of a NAC 67 transcription factor from finger millet (Eleusine coracana L.) confers tolerance against salinity and drought stress in rice.
    BMC Biotechnol., 2016. 16 Suppl 1: p. 35
    [PMID:27213684]