PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB07G15330.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 536aa    MW: 59034.7 Da    PI: 5.0927
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB07G15330.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.32.8e-13481527455
                   HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   +h   Er+RR+++N++f  Lr+l+P       +K++K +iL  ++eY+k+L+
  OB07G15330.1 481 SHVLKERKRREKLNEKFLILRSLVPFM-----TKMDKTSILGDTIEYVKQLK 527
                   79999*********************8.....8*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.1E-457205IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.514477526IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.63E-17478534IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.06E-15481531No hitNo description
Gene3DG3DSA:4.10.280.102.9E-16481535IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.0E-11481526IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-14483532IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010026Biological Processtrichome differentiation
GO:0010214Biological Processseed coat development
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 536 aa     Download sequence    Send to blast
MAAGDAQAAL QAVARSLRWT YSLLWHPCPH QGSSLVWAEG HYNGAVKTRK TVQPAAAAEE  60
EEDADHAARH RSRQLRELYD WLAGEAASSS DCAGAGGGGG SGQAAASRRP SAALSPEDLT  120
ETEWFFLMSA SYSFPPAIGL PGRAFARRGH VWLTGANEVD SKVFLRAILA KTVVCIPVVD  180
GVLEIGTTEK VEEDIGLVQY ARSIFMEQHG IHMKPTLSEH STSNPVTHIH QHPVQVQMQT  240
GISQTNLDSD GLNPEEENDE TEEEGMSGSD TNTDTARDNP GLQQEPLNMV SYDQTIPNNA  300
ASSELMQCEM SELVRDGCSN NLDEEIQMLM DYQNSNGQFS LQGPDDPCHS WHFICEELQN  360
NCQPASEDQV SSPENCHYPK TLLTILQHNA QRQSELKTSS YLPVSEQSSF SRWSPEGIAD  420
NHVMISRQGA TQRMLKCILM MIVPGSHYSY SREAQTPESR GGKGAGGSRK AGAIQGDFSA  480
SHVLKERKRR EKLNEKFLIL RSLVPFMTKM DKTSILGDTI EYVKQLKNRI QDLESS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A2e-17720510192Transcription factor MYC3
4rqw_B2e-17720510192Transcription factor MYC3
4rs9_A2e-17720510192Transcription factor MYC3
4yz6_A2e-17720510192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1483489LKERKRR
2485490ERKRRE
3486491RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB07G15330.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF3030610.0JF303061.1 Oryza sativa Indica Group SD7-1D bHLH transcription factor (SD7-1/Rc) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015694563.10.0PREDICTED: truncated basic helix-loop-helix protein A-like
TrEMBLJ3MJF10.0J3MJF1_ORYBR; Uncharacterized protein
STRINGOB07G15330.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP88633036
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.19e-58bHLH family protein