PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB07G13730.1

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

CPP

Protein Properties

Length: 794aa MW: 85244.3 Da PI: 7.01

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB07G13730.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	50.2	5.1e-16	478	516	2	40
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 +k+C+CkkskClk+YCeCfaag++Cse C+C++C Nk OB07G13730.1 478 ACKRCSCKKSKCLKLYCECFAAGVYCSEPCSCQGCLNKP 516 589**********************************96 PP
2	TCR	50.9	3.2e-16	563	602	1	40
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+gCnCkks+ClkkYCeC++ g+ Cs++C+Ce+CkN+ OB07G13730.1 563 RHKRGCNCKKSSCLKKYCECYQGGVGCSSNCRCEGCKNTF 602 589***********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	3.8E-17	477	518	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	37.536	478	603	IPR005172	CRC domain
Pfam	PF03638	9.0E-12	480	515	IPR005172	CRC domain
SMART	SM01114	1.7E-17	563	604	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	5.2E-12	565	601	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 794 aa Download sequence Send to blast
MQHRPPVVGT VSPFPALSRP PILTADSPLF SFIDSLSPIE PLKSAYSASS IQAYQSLNIT 60 SISSIFTSPH DNAQKESKLS KSSFAEFSES EVCAAEGDKN KPSKSSNAVR LFACASTLTQ 120 ATHRITSSVS EGTVVPPEGS NGLPQPGQFD AGSPDHNTTP CHGVRSDLKQ GKCRKLQPFQ 180 AAKNNTSEKR KCLFSTEVQL LDGCQPEKLN DEILGCEWDD LISATSGELI AYDEDHKGVQ 240 LAVSNAESCG FLLSKLTGDG DISDRTHPSS STQTYYRELL MEDDQPENAQ LIPDGEKNIS 300 SEEIQDNLYE ANGSIPTGYK VETQQQRGMR RRCLIFEATG YSNSIMQKES VMDLSASTCK 360 GKSPVENHPN PGKTPSPRVL RGIGLHLNAL ALTPKDKMVC QDPLASSLVP SSATQQEAHG 420 KLLSAGENFA HPGCELLELQ MDDDCSAGAF LGNDHNSSQS NSPQKKRRKA DNGDDGEACK 480 RCSCKKSKCL KLYCECFAAG VYCSEPCSCQ GCLNKPIHEE IVLSTRKQIE FRNPLAFAPK 540 VIRTSDAGQE TGEDPNNTPA SARHKRGCNC KKSSCLKKYC ECYQGGVGCS SNCRCEGCKN 600 TFGKRDAAVS TEAEEMKQGG EEAENCGKEK ENDLQKANVQ SEDHPILELV PITPPFDVSS 660 SLFKPPNFSS AKPPRPTKAR SAISSRPSSK SAQAAHSRKI SKAADSGLNE EMPDILKDDA 720 SPGNCVKTSS PNGKRVSPPH NALSVSPSRK GGRKLILKSI PSFPSLIGDT SSGSAMNSSD 780 RAFSTASPLA LGPS

Sequence ? help Back to Top

Protein Sequence Length: 794 aa Download sequence Send to blast

MQHRPPVVGT VSPFPALSRP PILTADSPLF SFIDSLSPIE PLKSAYSASS IQAYQSLNIT  60
SISSIFTSPH DNAQKESKLS KSSFAEFSES EVCAAEGDKN KPSKSSNAVR LFACASTLTQ  120
ATHRITSSVS EGTVVPPEGS NGLPQPGQFD AGSPDHNTTP CHGVRSDLKQ GKCRKLQPFQ  180
AAKNNTSEKR KCLFSTEVQL LDGCQPEKLN DEILGCEWDD LISATSGELI AYDEDHKGVQ  240
LAVSNAESCG FLLSKLTGDG DISDRTHPSS STQTYYRELL MEDDQPENAQ LIPDGEKNIS  300
SEEIQDNLYE ANGSIPTGYK VETQQQRGMR RRCLIFEATG YSNSIMQKES VMDLSASTCK  360
GKSPVENHPN PGKTPSPRVL RGIGLHLNAL ALTPKDKMVC QDPLASSLVP SSATQQEAHG  420
KLLSAGENFA HPGCELLELQ MDDDCSAGAF LGNDHNSSQS NSPQKKRRKA DNGDDGEACK  480
RCSCKKSKCL KLYCECFAAG VYCSEPCSCQ GCLNKPIHEE IVLSTRKQIE FRNPLAFAPK  540
VIRTSDAGQE TGEDPNNTPA SARHKRGCNC KKSSCLKKYC ECYQGGVGCS SNCRCEGCKN  600
TFGKRDAAVS TEAEEMKQGG EEAENCGKEK ENDLQKANVQ SEDHPILELV PITPPFDVSS  660
SLFKPPNFSS AKPPRPTKAR SAISSRPSSK SAQAAHSRKI SKAADSGLNE EMPDILKDDA  720
SPGNCVKTSS PNGKRVSPPH NALSVSPSRK GGRKLILKSI PSFPSLIGDT SSGSAMNSSD  780
RAFSTASPLA LGPS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	2e-16	482	600	14	120	Protein lin-54 homolog
5fd3_B	2e-16	482	600	14	120	Protein lin-54 homolog
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	464	468	KKRRK

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00624	PBM	Transfer from PK22848.1	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB07G13730.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK065897	0.0	AK065897.1 Oryza sativa Japonica Group cDNA clone:J013048O08, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006658327.1	0.0	PREDICTED: protein tesmin/TSO1-like CXC 2
TrEMBL	J3MIZ1	0.0	J3MIZ1_ORYBR; Uncharacterized protein
STRING	OB07G13730.1	0.0	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6147	34	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14770.1	1e-89	TESMIN/TSO1-like CXC 2