PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB07G12490.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | TCP | ||||||||
Protein Properties | Length: 44aa MW: 5083.76 Da PI: 12.3021 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 37.9 | 6.1e-12 | 18 | 44 | 2 | 28 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaec 28 g+kdrhsk++T++g RdRRvRls+++ OB07G12490.1 18 SGGKDRHSKVYTAKGIRDRRVRLSVST 44 689*********************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.5E-11 | 19 | 43 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 14.884 | 20 | 44 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 44 aa Download sequence Send to blast |
PWQQQQPASR IYRVSRASGG KDRHSKVYTA KGIRDRRVRL SVST |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}. | |||||
UniProt | Transcription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB07G12490.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003704 | 2e-52 | AP003704.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1048_C10. | |||
GenBank | AP006163 | 2e-52 | AP006163.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:B1364A02. | |||
GenBank | AP014963 | 2e-52 | AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012615 | 2e-52 | CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015694527.1 | 5e-23 | PREDICTED: LOW QUALITY PROTEIN: transcription factor PCF6 | ||||
Swissprot | A2XMN1 | 3e-14 | PCF6_ORYSI; Transcription factor PCF6 | ||||
Swissprot | Q10CE8 | 3e-14 | PCF6_ORYSJ; Transcription factor PCF6 | ||||
TrEMBL | J3MIL7 | 2e-22 | J3MIL7_ORYBR; Uncharacterized protein | ||||
STRING | OB07G12490.1 | 3e-23 | (Oryza brachyantha) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30210.2 | 2e-16 | TCP family protein |