PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB07G12010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB | ||||||||
Protein Properties | Length: 719aa MW: 79809.5 Da PI: 10.1 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 22.7 | 2.4e-07 | 93 | 184 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT..............................................-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..............................................tWktIartmgkgRtlkqcksrwqk 46 +++W+ E ++l++++kq + +W++Ia++ gR++ +c srw++ OB07G12010.1 93 KQPWSDAEKDKLAKGIKQQYQEalildsmnngsstgdfsavdmayaltntagnfemtpeslrsvlpliNWDKIAAMYLPGRSGAECESRWLN 184 799***************99999***************************************************99888***********98 PP | |||||||
2 | Myb_DNA-binding | 29 | 2.5e-09 | 193 | 237 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++WT+ E+++l+ v+q G+++W Ia +g++Rt+ qc ++q OB07G12010.1 193 NAWTAREEKRLLLTVQQQGMNNWINIAVALGTHRTPFQCLAHYQR 237 68*****************************************96 PP | |||||||
3 | Myb_DNA-binding | 47.3 | 4.9e-15 | 247 | 290 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 W++eEd++l av+ +G++ W ++++ m gRt++qc +rw+k l OB07G12010.1 247 DWSKEEDLQLQAAVNTFGTN-WQLVSASMD-GRTGNQCSNRWRKTL 290 6*****************99.*********.************975 PP | |||||||
4 | Myb_DNA-binding | 44.8 | 2.9e-14 | 298 | 343 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 grW+ +Ed++l avk++ + +W++Ia+ ++ gRt qc +rw+++l OB07G12010.1 298 GRWSLDEDKRLMVAVKLFESASWNKIAQFIP-GRTQSQCNERWRNVL 343 8******************************.************986 PP | |||||||
5 | Myb_DNA-binding | 27.5 | 7.5e-09 | 350 | 394 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHH.HHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIa.rtmgkgRtlkqcksrwqky 47 g+W +eEd +l+ v ++G+ W +Ia ++++ +Rt+++c rw+ + OB07G12010.1 350 GKWRPEEDSKLLASVDEFGPC-WCKIAgAKIP-HRTDNMCLRRWRRL 394 79*****************88.****945777.***********975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.226 | 88 | 184 | IPR017877 | Myb-like domain |
SMART | SM00717 | 1.0E-4 | 92 | 188 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-7 | 93 | 125 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 0.00136 | 157 | 184 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.0E-7 | 161 | 206 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.51E-5 | 161 | 196 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 8.246 | 187 | 239 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 4.4E-22 | 191 | 286 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.9E-5 | 191 | 241 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-6 | 193 | 237 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.87E-5 | 194 | 239 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.5E-8 | 207 | 245 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.707 | 240 | 294 | IPR017930 | Myb domain |
SMART | SM00717 | 4.7E-13 | 244 | 292 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.6E-15 | 246 | 292 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.2E-13 | 247 | 289 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.52E-10 | 248 | 290 | No hit | No description |
PROSITE profile | PS50090 | 10.348 | 292 | 343 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 4.3E-16 | 295 | 343 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 8.07E-24 | 296 | 391 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.4E-10 | 296 | 345 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.76E-9 | 299 | 343 | No hit | No description |
Pfam | PF13921 | 1.9E-13 | 300 | 360 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.2E-15 | 344 | 399 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.653 | 344 | 399 | IPR017930 | Myb domain |
SMART | SM00717 | 7.6E-9 | 348 | 397 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.67E-9 | 351 | 394 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 719 aa Download sequence Send to blast |
MITIEAKIEE NKDLRDRVKC LLDYQLSCRK AFGKILCQKE DPRVRLVSSR RPCAQSAKNK 60 DKKTPALFLG PADNPHVSKY KMALKQFPMS LQKQPWSDAE KDKLAKGIKQ QYQEALILDS 120 MNNGSSTGDF SAVDMAYALT NTAGNFEMTP ESLRSVLPLI NWDKIAAMYL PGRSGAECES 180 RWLNCDDPLI NHNAWTAREE KRLLLTVQQQ GMNNWINIAV ALGTHRTPFQ CLAHYQRSLN 240 HCILNKDWSK EEDLQLQAAV NTFGTNWQLV SASMDGRTGN QCSNRWRKTL NPERSRVGRW 300 SLDEDKRLMV AVKLFESASW NKIAQFIPGR TQSQCNERWR NVLDPDIDLG KWRPEEDSKL 360 LASVDEFGPC WCKIAGAKIP HRTDNMCLRR WRRLCKDKLP SIKAAHQIKK AIFQSNFVDR 420 ETERPAIGPS DLMPIVCSKV GGIGDSTVSA QARKPRKSSR MPCENNILPS DTLNSSASVN 480 LSLSESIDPE AVVNTTTSSS RRKSSRSKSQ FDENLAVSDD VNNSSNCSSG ARKRKRSVAG 540 NNQVAQKKIR GSNSGDNEAE TMGCSISVNN EVAEKRTAKK RTRKVSFSGK EGEPKKRMKG 600 SVSGVHEGAT KRMRGSISTG NYGVVMKSKR APSRKSAKEN SKADSMTEGS VDKYSTSTRL 660 ADCMPFTRIN GPSRVASHLC VSVGPLSNMV HSNGPSNDMS AIAISSGPDP TYVESSSIA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 5e-24 | 164 | 416 | 8 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 5e-24 | 164 | 416 | 8 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB07G12010.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK065452 | 0.0 | AK065452.1 Oryza sativa Japonica Group cDNA clone:J013025M19, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015694522.1 | 0.0 | PREDICTED: uncharacterized protein LOC102706862, partial | ||||
TrEMBL | J3MIG9 | 0.0 | J3MIG9_ORYBR; Uncharacterized protein | ||||
STRING | OB07G12010.1 | 0.0 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6594 | 35 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18100.2 | 1e-141 | myb domain protein 4r1 |