PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB07G11390.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 613aa    MW: 67476.2 Da    PI: 7.8514
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB07G11390.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.65.5e-12261313855
           AP2   8 wdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                   +++++gr++A+++d  ++  g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  OB07G11390.1 261 RHRWTGRYEAHLWDnSCKkEGqtRKgRQVYLGGYDMEEKAARAYDLAALKYWG 313
                   89************988886678446*************************98 PP
2AP247.25.6e-15358407355
           AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                   y+GV+++++ grW A+I  +s    +k  +lg+f t eeAa+a++ a+ k++g
  OB07G11390.1 358 YRGVTRHHQHGRWQARIGRVSG---NKDLYLGTFSTQEEAAEAYDVAAIKFRG 407
                   9***************999754...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103216.41254321IPR001471AP2/ERF domain
CDDcd000186.20E-15261321No hitNo description
Gene3DG3DSA:3.30.730.105.2E-13261322IPR001471AP2/ERF domain
SMARTSM003808.2E-21261327IPR001471AP2/ERF domain
PfamPF008475.5E-9261313IPR001471AP2/ERF domain
SuperFamilySSF541715.36E-13261322IPR016177DNA-binding domain
SuperFamilySSF541718.5E-18356416IPR016177DNA-binding domain
CDDcd000181.27E-22356417No hitNo description
Gene3DG3DSA:3.30.730.101.5E-18357415IPR001471AP2/ERF domain
SMARTSM003801.9E-33357421IPR001471AP2/ERF domain
PROSITE profilePS5103219.296357415IPR001471AP2/ERF domain
PfamPF008473.2E-10358407IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 613 aa     Download sequence    Send to blast
MTNSNNGNAG TNAAASGWLG FSLSPHMASS MDEHHHVHQQ QQQQHHGLFF PSVTTAAAAY  60
GLGGDVRIRD TGVAPPSSPP PPPAAASGLG GDVVAATNGY YSQLASMPLK SDGSLCIMEA  120
LRRTDQDHHG PKLEDFLGAA QPAMALSLDN TSSFYYGGXX XXXXXXXXXX XXXXXXXXXX  180
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX GHLHPLALSM SSGSLSSCVT AGDYGMASPA  240
AGPPPTAAAG AAAAAAGRSS RHRWTGRYEA HLWDNSCKKE GQTRKGRQVY LGGYDMEEKA  300
ARAYDLAALK YWGPSTHINF PLEDYQEELE EMKNMTRQEY VAHLRRKSSG FSRGASMYRG  360
VTRHHQHGRW QARIGRVSGN KDLYLGTFST QEEAAEAYDV AAIKFRGLNA VTNFDITRYD  420
VDKIMASNTL LPGDLARRKK DADDSAAXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  480
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  540
XXXXXXXXXX XXXXXXXXXX XFFDKPSSAA ASQASKLMAP LPLGSWVSSP PASARPAAVS  600
IAHMPLFAAW TDA
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB07G11390.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1098480.0AK109848.1 Oryza sativa Japonica Group cDNA clone:002-148-F05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ84Z021e-122CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLJ3MIA70.0J3MIA7_ORYBR; Uncharacterized protein
STRINGOB07G11390.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94838133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-110AP2 family protein
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]