PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB07G10630.1 | ||||||||
Common Name | LOC102717353 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 265aa MW: 30236.6 Da PI: 9.6463 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 97.9 | 4.1e-31 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtfskRrng+lKKA+E+SvLCdaeva i+fs++gklyey++ OB07G10630.1 9 KRIENKINRQVTFSKRRNGLLKKAHEISVLCDAEVAAIVFSPKGKLYEYAT 59 79***********************************************86 PP | |||||||
2 | K-box | 109.8 | 3e-36 | 78 | 173 | 4 | 99 |
K-box 4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 + s+e++ + ++++e++kLk++ie++q+ ++hl+GedLesL+lkeLqqLeqqLe+slk+iRs+K++l+le+i+elqkke++lqeenkaL+k+l OB07G10630.1 78 KALISAESESEGNWCHEYRKLKAKIETIQKCHKHLMGEDLESLNLKELQQLEQQLESSLKHIRSRKSHLMLESISELQKKERSLQEENKALQKELV 173 556667888899********************************************************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.4E-42 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 32.674 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 8.37E-35 | 2 | 88 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 4.64E-42 | 2 | 76 | No hit | No description |
PRINTS | PR00404 | 1.9E-31 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.6E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.9E-31 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.9E-31 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.2E-30 | 84 | 172 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 17.541 | 88 | 178 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 265 aa Download sequence Send to blast |
MGRGKVQLKR IENKINRQVT FSKRRNGLLK KAHEISVLCD AEVAAIVFSP KGKLYEYATD 60 SRMDKILERY ERYSYAEKAL ISAESESEGN WCHEYRKLKA KIETIQKCHK HLMGEDLESL 120 NLKELQQLEQ QLESSLKHIR SRKSHLMLES ISELQKKERS LQEENKALQK ELVERQKTVT 180 VRGQQQVVQW DQAQAQAQAQ PQAQTSSSSS SMLRDQQALL PPQNICYPPV MMGERSDAAA 240 AAAVQGQVQL RIGGLPPWML SHLNA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 1e-22 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_B | 1e-22 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_C | 1e-22 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_D | 1e-22 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_A | 1e-22 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_B | 1e-22 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_C | 1e-22 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_D | 1e-22 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB07G10630.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB003325 | 0.0 | AB003325.1 Oryza sativa Japonica Group mRNA for MADS box-like protein, complete cds, clone:E31864. | |||
GenBank | AY551920 | 0.0 | AY551920.1 Oryza sativa (japonica cultivar-group) MADS-box protein RMADS215 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006657400.1 | 0.0 | PREDICTED: MADS-box transcription factor 15 | ||||
Swissprot | Q6Q9I2 | 1e-153 | MAD15_ORYSJ; MADS-box transcription factor 15 | ||||
TrEMBL | J3MI31 | 0.0 | J3MI31_ORYBR; Uncharacterized protein | ||||
STRING | OB07G10630.1 | 0.0 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1151 | 37 | 113 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69120.1 | 2e-71 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 102717353 |