PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB07G10200.1 | ||||||||
Common Name | LOC102712371 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C2H2 | ||||||||
Protein Properties | Length: 312aa MW: 33570.3 Da PI: 7.3604 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.8 | 0.00017 | 62 | 84 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C + F++ L H+++H OB07G10200.1 62 YTCSFCRREFRSAQALGGHMNVH 84 9********************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.79E-6 | 59 | 89 | No hit | No description |
SMART | SM00355 | 0.0061 | 62 | 84 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 2.1E-5 | 62 | 85 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 11.219 | 62 | 89 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 64 | 84 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 312 aa Download sequence Send to blast |
MDAAAMDRMA KHYWAMWGAT ASGAAVRSAW PPAHGEPSWE EQAFAQDAAG HLGGCVWPPR 60 SYTCSFCRRE FRSAQALGGH MNVHRRDRAR LRQCASSPEP ADREDDLQVQ LQQPVVSLCA 120 PPPPVSADHQ LPAVGNHSPL LRLSSPNSTA GDSVHHQDQQ QLRAAIATTY NSSSASSPNS 180 CIATIIKESR NKARLFTTMP PPPAAAAAAA TTFGLGLGGD YVKEKEDDEN SLEERKRKRR 240 RVDEALTPTA AEGEGRRREA DHPDQDANKV ITSSPAPASS SSASAALLVH HRLAIVGRQE 300 VDLELRLGTS PA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1njq_A | 2e-13 | 57 | 84 | 2 | 29 | superman protein |
2l1o_A | 2e-13 | 57 | 84 | 2 | 29 | Transcriptional regulator SUPERMAN |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 234 | 239 | RKRKRR |
2 | 234 | 240 | RKRKRRR |
3 | 235 | 240 | KRKRRR |
4 | 236 | 240 | RKRRR |
5 | 237 | 241 | KRRRV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB07G10200.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012615 | 3e-80 | CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence. | |||
GenBank | CT836111 | 3e-80 | CT836111.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA103M23, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006657385.1 | 0.0 | PREDICTED: uncharacterized protein LOC102712371 | ||||
TrEMBL | J3MHY9 | 0.0 | J3MHY9_ORYBR; Uncharacterized protein | ||||
STRING | OB07G10200.1 | 0.0 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7845 | 29 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37740.1 | 1e-26 | zinc-finger protein 10 |
Link Out ? help Back to Top | |
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Entrez Gene | 102712371 |