PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB07G10150.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 784aa    MW: 88160.5 Da    PI: 5.4555
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB07G10150.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.50.000136016381355
                   HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH  13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   R+ i +++ eLr+l+P+       K s  + L k++ +I+ Lq
  OB07G10150.1 601 RQLIQDRMKELRQLVPNT-----SKCSIDSLLDKTIAHIQFLQ 638
                   67799************7.....47777778999999999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.5E-2189239IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000831.86E-4585638No hitNo description
PROSITE profilePS5088810.76588637IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.02E-6601642IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-5601643IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 784 aa     Download sequence    Send to blast
MGHENMDVMV CIEFNELTDY YIYSNKSPIN DLRENHMRKI DMLTITANWV CWDKCRWCST  60
AHHSDRSQEM TIRFDMRGPT EPHKAESAWS TCNQTGRILT WGDVYVDKVI RDTERDLYGN  120
LIEGKNQIVL STFCNNGQYQ SNPLCPIEAA LLSMSSHSYS LGEELIGKVA LMGQHCWISS  180
NEISSAFTYK YHEDWQLQVA AGIKTILLLP VVPHGVLQLG SLDLVSESST SVSVIKDLFY  240
KLYDAAISGN SSGTGFGYSH TWRQPTAMLP MNSSDVIPHD LFYSIKGSAR LLNNDHLGLP  300
HASPMLEFPL AEDSIVSIYG TSLAALSVEP LDCNDSDIWT NVHEELSQFT RFNTVPEPDK  360
ASISYMDKLI NSDSKMSSRS VSHVENPGYG NIDHFILTEM EHEKQEHINN NTSVNDDAVT  420
SNSSFHSELH KPLEPIPSDE REDYMWHIRR LRQQEPTSSA LPEENGNKAG LHKQQENNDY  480
AELLLDAIIG QVIWASNSVS SHSTDSPISC ATQIQKEDHV VRMDESSLPK LPGGQDFSLI  540
SINEGFMSCA MTDSTPRETN KTILVEEFIS DPIGGIHRET SIEIKGRCRK AGLHRTRPRD  600
RQLIQDRMKE LRQLVPNTSK CSIDSLLDKT IAHIQFLQSV SEKGDKLEKI VVINSESEES  660
TKWQTGNCPL KVEVLDKPGH LLLEMLCAEY GVFLEIAHVL KGLDVSILKG LLESRSDKLW  720
ARFVIQVRST IISKRLIRID VHLTGFTRLR PDADSIPTNA SVAEAELELS STHHAYIYCL  780
ALHG
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB07G10150.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0680200.0AK068020.1 Oryza sativa Japonica Group cDNA clone:J013134B16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015695117.10.0PREDICTED: transcription factor EMB1444-like isoform X2
TrEMBLJ3MHY40.0J3MHY4_ORYBR; Uncharacterized protein
STRINGOB07G10150.10.0(Oryza brachyantha)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31280.16e-36conserved peptide upstream open reading frame 7