PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB06G35920.1
Common NameLOC102706015
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 442aa    MW: 48320.3 Da    PI: 4.9254
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB06G35920.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.88.9e-1763107147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r +WT+eE++++++a k++G   W+ I +++g ++t+ q++s+ qk+
     OB06G35920.1  63 REKWTEEEHDRFLEALKLYGRS-WRQIQEHIG-TKTAVQIRSHAQKF 107
                      789*****************55.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.25E-1657111IPR009057Homeodomain-like
PROSITE profilePS5129421.70758112IPR017930Myb domain
TIGRFAMsTIGR015571.7E-1661110IPR006447Myb domain, plants
SMARTSM007177.0E-1462110IPR001005SANT/Myb domain
PfamPF002491.8E-1463106IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.9E-1063103IPR009057Homeodomain-like
CDDcd001678.62E-1165108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009845Biological Processseed germination
GO:0009909Biological Processregulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MASMARLEEK DGLDSSDSAI NRSLSLDVVK PSLPNDATAL QPKEGMEEYP VKVRKPYTIT  60
KQREKWTEEE HDRFLEALKL YGRSWRQIQE HIGTKTAVQI RSHAQKFFSK VVREPGTTTA  120
IEIPPPRPKR KPLHPYPRKC ANSGTDTNPA TGQTKLAPVS SSSGSDQENG SPVSVLSAMQ  180
SDTFGSSVSN PSTRCTSPAS SDDGNNVPTL AGGEDNVPCE QTGIDQSYKE IDQDGKDTDN  240
ISEDDSSEEV QETSLKLFGK TVVIPDPRKR GSSDPKHEEN EEQVSQSSKE EILQASSGAE  300
VPAAYGAPNG WLLSYNSFPF QSMDPRIAPL HVWWPCYGFA PTMNHPIGLS TMTQTEGTDE  360
SDSGKSPSAE SSSDYGDNVQ TAAPLNSRVV ESLGEICVRE SASSFELKPS SNSAFVRVKP  420
LSNSRDEEVR KGFVPYKRSK IQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB06G35920.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006656522.10.0PREDICTED: protein REVEILLE 1-like
TrEMBLJ3MHU80.0J3MHU8_ORYBR; Uncharacterized protein
STRINGOB06G35920.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP77833647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37260.13e-37MYB_related family protein