PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB06G35010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | SRS | ||||||||
Protein Properties | Length: 145aa MW: 14563.8 Da PI: 4.8579 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 73.3 | 7.4e-23 | 7 | 63 | 98 | 154 |
DUF702 98 keletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 + ++P+e+s+eavfrcvr++ d+ ++e+aYqtavsigGh+fkGiL+d+G+ + OB06G35010.1 7 SGEGDGRFPPELSVEAVFRCVRIGPGDEPDAEFAYQTAVSIGGHTFKGILRDHGPTD 63 3444566***********************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 1.3E-19 | 10 | 62 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01624 | 4.1E-18 | 13 | 61 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 145 aa Download sequence Send to blast |
MVTTTSSGEG DGRFPPELSV EAVFRCVRIG PGDEPDAEFA YQTAVSIGGH TFKGILRDHG 60 PTDEAGGGAR GGAGGGGHLP PSSAEYHQLT GQGREESSPA GSSEAVGGHG AATAVTSAAV 120 LMDPYPTPIG AFAAGTQFFP HNPRT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:12361963, ECO:0000269|PubMed:16740145, ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18811619, ECO:0000269|PubMed:20154152, ECO:0000269|PubMed:22318676}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB06G35010.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Regulated by ESR1 and ESR2. {ECO:0000269|PubMed:21976484}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004329 | 5e-86 | AP004329.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OJ1663_H12. | |||
GenBank | AP005463 | 5e-86 | AP005463.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0712G01. | |||
GenBank | AP014962 | 5e-86 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012614 | 5e-86 | CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015693709.1 | 3e-99 | PREDICTED: protein SHI RELATED SEQUENCE 1, partial | ||||
Swissprot | Q9SD40 | 2e-22 | SRS1_ARATH; Protein SHI RELATED SEQUENCE 1 | ||||
TrEMBL | J3MHK7 | 1e-97 | J3MHK7_ORYBR; Uncharacterized protein | ||||
STRING | OB06G35010.1 | 2e-98 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1354 | 35 | 124 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G51060.1 | 7e-21 | Lateral root primordium (LRP) protein-related |
Publications ? help Back to Top | |||
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