PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB06G32920.1 | ||||||||
Common Name | LOC102717533 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ARF | ||||||||
Protein Properties | Length: 695aa MW: 75764.3 Da PI: 8.2519 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 76 | 4.4e-24 | 128 | 229 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 f k+lt+sd+++ g +++p+ +ae++ ++ + t+ +d +g +W++++iyr++++r++lt+GW+ Fv++++L +gD++vF+ +++++ OB06G32920.1 128 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TVLAKDVHGVVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFM--RTENG 220 89****************************996555555..8999*********************************************..45889 PP ..EEEEE-S CS B3 91 elvvkvfrk 99 l+v+++r+ OB06G32920.1 221 DLCVGIRRA 229 99****997 PP | |||||||
2 | Auxin_resp | 112.9 | 3.1e-37 | 287 | 370 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa+ a ++++FevvY+Prast+eF+vk+ v++a+++++ +GmRfkmafetedss++++ +Gtv++v+ +dp+rWpnS+Wr+L+ OB06G32920.1 287 AANLAVSGQPFEVVYYPRASTPEFCVKAGAVRAAMRTQWFAGMRFKMAFETEDSSRISWfMGTVSAVQVADPIRWPNSPWRLLQ 370 688999****************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.9E-37 | 119 | 231 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.16E-28 | 124 | 230 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 9.32E-21 | 127 | 228 | No hit | No description |
PROSITE profile | PS50863 | 12.999 | 128 | 230 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.4E-22 | 128 | 229 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.4E-21 | 128 | 230 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 3.1E-32 | 287 | 370 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 24.028 | 609 | 689 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007389 | Biological Process | pattern specification process | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0048829 | Biological Process | root cap development | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 695 aa Download sequence Send to blast |
MITFVDSAAK ERERENDKCL DPQLWHACAG GMVQMPPVNS KVYYFPQGHA EHAQGQGPVE 60 FPAGRVPALV LCRVAGVRFM ADPDTDEVFT KIRLVPVRAN EQGYPADADD GIGAAAAAAA 120 QEEKPASFAK TLTQSDANNG GGFSVPRYCA ETIFPRLDYS ADPPVQTVLA KDVHGVVWKF 180 RHIYRGTPRR HLLTTGWSTF VNQKKLVAGD SIVFMRTENG DLCVGIRRAK KGGVGGPELL 240 PPPLPPAGGN YGGFSMFLRG DDDSNKMAGA ARGKVKARVR PEEVVDAANL AVSGQPFEVV 300 YYPRASTPEF CVKAGAVRAA MRTQWFAGMR FKMAFETEDS SRISWFMGTV SAVQVADPIR 360 WPNSPWRLLQ VSWDEPDLLQ NVKRVSPWLV EVVSNMPAIH LAPFSPPRKK LCVPLYPELP 420 IDGQFPTPMF HGNPLARGVG PMCYFPDGTP AGIQGARHAQ FGISLSDLHL NKLQSSLSPH 480 RLHQLDHGMQ PRIAAGLIIG HPTARDDISC LLTIGSPQNN KKSDCKKAPA QLMLFGKPIL 540 TEQQISLGDA APMSVRKSSS DGNAEKTVKK SNSDVSSPRS NQNGTTDNLS CGGVPLCQDN 600 KVLDVGLETG HCKVFMQSED VGRTLDLSVV GSYEELYRRL ADMFGIEKAE LMSHVFYRDA 660 AGALKHTGDE PFSEFTKTAR RLNILTDTSS NNLAR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 5e-80 | 20 | 392 | 51 | 389 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00461 | DAP | Transfer from AT4G30080 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB06G32920.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK100322 | 0.0 | AK100322.1 Oryza sativa Japonica Group cDNA clone:J023079H12, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006656399.1 | 0.0 | PREDICTED: auxin response factor 18 | ||||
Swissprot | Q653H7 | 0.0 | ARFR_ORYSJ; Auxin response factor 18 | ||||
TrEMBL | J3MGZ8 | 0.0 | J3MGZ8_ORYBR; Auxin response factor | ||||
STRING | OB06G32920.1 | 0.0 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP516 | 37 | 152 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G30080.1 | 0.0 | auxin response factor 16 |
Link Out ? help Back to Top | |
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Entrez Gene | 102717533 |
Publications ? help Back to Top | |||
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