PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB06G32420.1
Common NameLOC102711985
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARF
Protein Properties Length: 916aa    MW: 101647 Da    PI: 6.211
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB06G32420.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B376.72.6e-24134235199
                   EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                   f+k+lt sd++++g +++p++ ae+        ++++++  +l+ +d++g++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   ++++ 
  OB06G32420.1 134 FCKTLTASDTSTHGGFSVPRRAAEKVfppldftQQPPAQ--ELIAKDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNDNN 226
                   99*****************************86555544..8************************************************..77777 PP

                   ..EEEEE-S CS
            B3  91 elvvkvfrk 99 
                   +l+++++r+
  OB06G32420.1 227 QLLLGIRRA 235
                   78***9997 PP
2Auxin_resp118.26.9e-39260343183
    Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                   aahaast+s F+++YnPras+seFv++++k++ka++ +++svGmRf+m fete+ss rr++Gt++g+sdld  rWpnS+Wrs+k
  OB06G32420.1 260 AAHAASTNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRISVGMRFRMLFETEESSVRRYMGTITGISDLDAARWPNSHWRSVK 343
                   79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.7E-48119263IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.7E-43126249IPR015300DNA-binding pseudobarrel domain
CDDcd100171.82E-22133234No hitNo description
PROSITE profilePS5086313.239134236IPR003340B3 DNA binding domain
PfamPF023628.3E-23134235IPR003340B3 DNA binding domain
SMARTSM010191.8E-25134236IPR003340B3 DNA binding domain
PfamPF065074.1E-34260343IPR010525Auxin response factor
PfamPF023092.5E-8782870IPR033389AUX/IAA domain
SuperFamilySSF542772.22E-7782861No hitNo description
PROSITE profilePS5174523.1785869IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 916 aa     Download sequence    Send to blast
MRLSSSSGSV IPAQAASPEA VEEHKCLNSE LWHACAGPLV SLPAVGSRVV YFPQGHSEQV  60
AASTNKEMES QIPNYPNLPA QLICQLHNVT MHADAETDEV YAQMTLQPLS PQELKDPYLP  120
AELGTANKQP TNYFCKTLTA SDTSTHGGFS VPRRAAEKVF PPLDFTQQPP AQELIAKDLH  180
GNEWKFRHIF RGQPKRHLLT TGWSVFVSAK RLVAGDSVLF IWNDNNQLLL GIRRANRPQT  240
VMPSSVLSSD SMHIGLLAAA AHAASTNSRF TIFYNPRASP SEFVIPLAKY VKAVYHTRIS  300
VGMRFRMLFE TEESSVRRYM GTITGISDLD AARWPNSHWR SVKVGWDEST AGERQPRVSL  360
WEIEPLTTFP MYPSPFPLRL KRPWPTGLPS LHGGKDDDLT SSLMWLRESA NPGFQSLNFG  420
GLGMSPWMQP RMDASLLGLQ PDIYQTIAVT AFQDPTKQVS PTMLQFQQPQ NMGGRANTLL  480
PSQVLQQVQP QFQQQQYLQN INETTIQGQA QSEFLQQQLQ RCQSFTEQKP QLPTQQQQES  540
QQQQQQQQTQ CMQVPQHQQM QQQKNMANYQ SVSNALSPFS QLAASQSSPM TLQTVLPFSQ  600
PQSFPDTNMS SLSPSNTSTI HNTLRPFSSE APSHLSMPRP TAIPVPDPWS SKRVAVESLL  660
PSRPQVTSQI EQLDSTTPNI PQSSALAPLP GRGCLVDQDG SSDPQNHLLF GVNIDSQSLL  720
MQGGIPSLQG ENDSTAIPYS TSNFLSPSQN DFPLDQTLNS ADCLDESGYV PCSQNSDQVI  780
NRPPATFVKV YKSGTYGRSL DITRFSSYHE LRRELGRLFG LEGQLENPLR SGWQLVFVDR  840
EDDVLLVGDD PWQEFVNSVS CIKILSPQEV QQMGKPFELL SSAPGKRLGS SCDDYVSRQE  900
SRSLSTGIAS VGSVEF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1612736451388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB06G32420.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1032800.0AK103280.1 Oryza sativa Japonica Group cDNA clone:J033124L19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006656378.10.0PREDICTED: auxin response factor 17
SwissprotQ653U30.0ARFQ_ORYSJ; Auxin response factor 17
TrEMBLJ3MGU80.0J3MGU8_ORYBR; Auxin response factor
STRINGOB06G32420.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20123685
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.20.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]