PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB06G32260.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 247aa MW: 28131.8 Da PI: 8.2798 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 126.8 | 1.7e-39 | 2 | 94 | 35 | 128 |
NAM 35 kevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +vd++k+ePwdLp+ + + kewyf+s rd+kyatg+r+nrat+sgyWkatgkd+++ + kg lvg++ktLvfykgrapkg+kt+Wvmhe+r OB06G32260.1 2 VDVDLNKCEPWDLPEIACIGGKEWYFYSLRDRKYATGQRTNRATESGYWKATGKDRPISR-KGLLVGMRKTLVFYKGRAPKGKKTEWVMHEFRK 94 689***********7666789*************************************99.999****************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 45.433 | 1 | 117 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 5.89E-47 | 2 | 117 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.5E-15 | 15 | 93 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MVDVDLNKCE PWDLPEIACI GGKEWYFYSL RDRKYATGQR TNRATESGYW KATGKDRPIS 60 RKGLLVGMRK TLVFYKGRAP KGKKTEWVMH EFRKEEQGDA MKLPLKEDWV LCRVFYKSRA 120 TIAKLPTDIY NDNSVATTSL PPLIDNYIAF DQPGSSMQNL EGYEQVPCFS NNPSHPSSST 180 MNNLPLTPST AMADQEQNMG RAIKDVLSQF TKFEGNVKRE ALQSNFSQDG FDYLAESGFT 240 QMWNSLS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-38 | 1 | 117 | 47 | 168 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB06G32260.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK063648 | 0.0 | AK063648.1 Oryza sativa Japonica Group cDNA clone:001-119-A03, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015693718.1 | 0.0 | PREDICTED: NAC domain-containing protein 21/22-like | ||||
Swissprot | Q84TE6 | 6e-71 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | J3MGT2 | 0.0 | J3MGT2_ORYBR; Uncharacterized protein | ||||
STRING | OB06G32260.1 | 0.0 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1012 | 37 | 138 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56010.2 | 3e-73 | NAC domain containing protein 1 |