PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB06G32000.1
Common NameLOC102707128
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 335aa    MW: 35949.7 Da    PI: 7.1813
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB06G32000.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.27.8e-1374118147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r +WT+ E++++++a +++  + Wk+I +++g  +t  q++s+ qky
     OB06G32000.1  74 RESWTEPEHDKFLEALQLFDRD-WKKIEAYVG-SKTVIQIRSHAQKY 118
                      789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.36E-1668124IPR009057Homeodomain-like
PROSITE profilePS5129414.62869123IPR017930Myb domain
TIGRFAMsTIGR015571.2E-1872121IPR006447Myb domain, plants
SMARTSM007172.7E-1073121IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.1E-673114IPR009057Homeodomain-like
PfamPF002491.3E-1074118IPR001005SANT/Myb domain
CDDcd001678.46E-876119No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MVSMSTTPKP LDATAAAAAV SGDGGGGGGG GGKEKEKQVG AVAAPLQPPM AVPAPVAGEE  60
ARKVRKPYTI TKSRESWTEP EHDKFLEALQ LFDRDWKKIE AYVGSKTVIQ IRSHAQKYFL  120
KVQKNGTGEH LPPPRPKRKA AHPYPQKASK NVSQAAISQP PPLGEQDCVM SMDTSPVIRN  180
VNASAAVPSW DNAIAQPFSA SRTQGTGAVA TNNCSSSIES PSATWPTSEA VEQENVLRPL  240
RAMPDFAQVY SFLGSIFDPD TSGHLQKLKA MDPIDVETVL LLMRNLSMNL TNPDFEAHLR  300
LLSSCNSGSD QIKSEGMENL GSLQSCHLPF MVTSE
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00560DAPTransfer from AT5G52660Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB06G32000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0708710.0AK070871.1 Oryza sativa Japonica Group cDNA clone:J023073K02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006656359.10.0PREDICTED: protein REVEILLE 6-like isoform X3
SwissprotQ8H0W32e-99RVE6_ARATH; Protein REVEILLE 6
TrEMBLJ3MGQ60.0J3MGQ6_ORYBR; Uncharacterized protein
STRINGOB06G32000.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109638111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.24e-87MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]