PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB06G29960.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 445aa    MW: 48443 Da    PI: 7.3271
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB06G29960.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.66.5e-18107156155
           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                   s+y+GV++++++grW+++I+d      + k+++lg f+ta+ Aa+a+++a+ k++g
  OB06G29960.1 107 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAQAAARAYDQAAIKFRG 156
                   78*******************......55************************997 PP
2AP240.56.9e-13199247153
           AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkl 53 
                   s+++GV+ +k  g+W+A+I         +k+++lg ++t+ eAaka+++a+ k 
  OB06G29960.1 199 SRFRGVTLHK-CGKWEARIGQlM----GKKYVYLGLYDTEMEAAKAYDKAAIKC 247
                   789*******.7******77733....25**********77*********9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.6E-10107156IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-15107165IPR016177DNA-binding domain
PROSITE profilePS5103217.688108164IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-17108164IPR001471AP2/ERF domain
SMARTSM003801.7E-31108170IPR001471AP2/ERF domain
CDDcd000182.13E-23199259No hitNo description
SuperFamilySSF541716.34E-17199258IPR016177DNA-binding domain
PfamPF008479.6E-9199249IPR001471AP2/ERF domain
PROSITE profilePS5103214.789200257IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.1E-17200258IPR001471AP2/ERF domain
SMARTSM003802.1E-32200263IPR001471AP2/ERF domain
PRINTSPR003672.1E-5201212IPR001471AP2/ERF domain
PRINTSPR003672.1E-5239259IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MAATTKGAFY GVGGIALAMH RDDEEAVVVV EEEELEEGSG SIFGFSVPAG GDFVRPAVVT  60
QQFFPMTVAA AEQRLAMEQC HVAAAGAEQW PRPPSRKTRR GPRSRSSQYR GVTFYRRTGR  120
WESHIWDCGK QVYLGGFDTA QAAARAYDQA AIKFRGVEAD INFTLDDYKE DIKKMNNFSK  180
EEFVQVLRRQ GAGFVRGSSR FRGVTLHKCG KWEARIGQLM GKKYVYLGLY DTEMEAAKAY  240
DKAAIKCCGK EAVTNFDTQA YEDELNLQSW ECEVDLELSL GCSGGERAGD PATDGVLHSA  300
PGNQRTSLTF NLPEVEEETR ACHGQRSIWS RPSLAPAMAD GGAAVRPDQH HYHLHPSSRS  360
MLLMSQVISS SGGGGRQGAA AAAELHMRPR HGWPNGDNNW QPYAARPRLP GADDNAAAAS  420
SGFPMGQVAT ASSRSRSSSS TATGR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition (Probable). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB06G29960.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2429570.0AK242957.1 Oryza sativa Japonica Group cDNA, clone: J090089I15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015694105.10.0PREDICTED: AP2-like ethylene-responsive transcription factor TOE3 isoform X2
SwissprotA0A0N7KMH00.0AP24_ORYSJ; APETALA2-like protein 4
TrEMBLJ3MG520.0J3MG52_ORYBR; Uncharacterized protein
STRINGOB06G29960.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118213439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.21e-88AP2 family protein
Publications ? help Back to Top
  1. Wang L, et al.
    Coordinated regulation of vegetative and reproductive branching in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9
    [PMID:26631749]
  2. Dai Z,Wang J,Zhu M,Miao X,Shi Z
    OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
    Front Plant Sci, 2016. 7: p. 1891
    [PMID:28066457]