PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB06G29870.1

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB_related

Protein Properties

Length: 113aa MW: 12362 Da PI: 8.3544

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB06G29870.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	64.8	1.6e-20	12	57	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+W++eEde l ++v+++G ++W++I r+++ gR++k+c++rw + OB06G29870.1 12 RGPWSPEEDEALRRLVERHGARNWTAIGREIP-GRSGKSCRLRWCNQ 57 89****************************.*********985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	26.592	7	62	IPR017930	Myb domain
SuperFamily	SSF46689	1.65E-17	7	61	IPR009057	Homeodomain-like
SMART	SM00717	2.2E-17	11	60	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	8.4E-22	12	61	IPR009057	Homeodomain-like
Pfam	PF00249	1.4E-19	12	57	IPR001005	SANT/Myb domain
CDD	cd00167	2.36E-17	14	56	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 113 aa Download sequence Send to blast
MGGVEADCDR IRGPWSPEED EALRRLVERH GARNWTAIGR EIPGRSGKSC RLRWCNQLSP 60 QEMIRAEVHK YMASVGVRAG CGDAGGADLH MPQLLEGVMR AAAERVGGVG RTH

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB06G29870.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK105817	2e-79	AK105817.1 Oryza sativa Japonica Group cDNA clone:001-203-C12, full insert sequence.
GenBank	AK121564	2e-79	AK121564.1 Oryza sativa Japonica Group cDNA clone:J033034J16, full insert sequence.
GenBank	AP003573	2e-79	AP003573.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0523F01.
GenBank	AP014962	2e-79	AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBank	CP012614	2e-79	CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
GenBank	CT833918	2e-79	CT833918.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN042F17, full insert sequence.
GenBank	CU406298	2e-79	CU406298.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C110G10, full insert sequence.
GenBank	CU406777	2e-79	CU406777.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C108L17, full insert sequence.
GenBank	CU406904	2e-79	CU406904.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C110F05, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015693651.1	1e-68	PREDICTED: transcription factor MYB44-like
TrEMBL	J3MG43	2e-75	J3MG43_ORYBR; Uncharacterized protein
STRING	OB06G29870.1	3e-76	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP30639	4	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67300.1	3e-28	myb domain protein r1