PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB06G29280.1
Common NameLOC102700351
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 308aa    MW: 32738.9 Da    PI: 4.5554
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB06G29280.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1353.2e-11145197456
                   XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 
                   +k+ rr ++NR +A +sR+RKk++++ Le k+k Leae ++L   l+    e 
  OB06G29280.1 145 SKKKRRQMRNRDSAMKSRERKKMYVKDLESKSKYLEAECRRLSYALQCCAAEN 197
                   699************************************99987776655555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003384.2E-6141206IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.714144186IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.3E-12146205No hitNo description
SuperFamilySSF579594.13E-11146204No hitNo description
PfamPF001704.7E-10146202IPR004827Basic-leucine zipper domain
CDDcd147047.18E-14147198No hitNo description
PROSITE patternPS000360149164IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0030968Biological Processendoplasmic reticulum unfolded protein response
GO:0005634Cellular Componentnucleus
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MDAVADAAVV AGDGEFFLPD LDLDALLASF SGAGSGVSGL FAPSPPAADA EAGSPESVSS  60
RLSPTRGGKL LEIERFLMEE EGVEAAAEGV GVDDFFDSLL VDCGEEEEEE GSEAGGSTGG  120
ESGKDNEVAT PEAEKEEVDG DDPISKKKRR QMRNRDSAMK SRERKKMYVK DLESKSKYLE  180
AECRRLSYAL QCCAAENMAL RQSLLKDRPV GAAAAMQESA VLTETLPLVS LLWLVSIVCL  240
LLMPGLPNRN PVARSSAGRD LATVTGKKTS SEQQLETLKL LLHGRRCKGS RARIKLDTGP  300
FHAAAAAC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1145149KKKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in endoplasmic reticulum (ER) stress response (PubMed:21223397, PubMed:22050533, PubMed:22199238). Acts downstream of the ER stress sensors IRE1, BZIP39 and BZIP60 to activate BiP chaperone genes (PubMed:22050533, PubMed:22199238). {ECO:0000269|PubMed:21223397, ECO:0000269|PubMed:22050533, ECO:0000269|PubMed:22199238}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00019PBMTransfer from AT1G42990Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB06G29280.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By dithiothreitol-induced endoplasmic reticulum (ER) stress response (PubMed:22050533, PubMed:21223397). Induced by salt stress (PubMed:22050533). {ECO:0000269|PubMed:21223397, ECO:0000269|PubMed:22050533}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1070210.0AK107021.1 Oryza sativa Japonica Group cDNA clone:002-121-A01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006657145.10.0PREDICTED: bZIP transcription factor 60
SwissprotQ69XV01e-139BZP50_ORYSJ; bZIP transcription factor 50
TrEMBLJ3MFY40.0J3MFY4_ORYBR; Uncharacterized protein
STRINGOB06G29280.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69343750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G42990.12e-11basic region/leucine zipper motif 60
Publications ? help Back to Top
  1. Wakasa Y, et al.
    Expression of ER quality control-related genes in response to changes in BiP1 levels in developing rice endosperm.
    Plant J., 2011. 65(5): p. 675-89
    [PMID:21223397]
  2. Lu SJ, et al.
    Conservation of IRE1-regulated bZIP74 mRNA unconventional splicing in rice (Oryza sativa L.) involved in ER stress responses.
    Mol Plant, 2012. 5(2): p. 504-14
    [PMID:22199238]