PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB06G28940.1
Common NameLOC102720252
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 466aa    MW: 51067.4 Da    PI: 9.3615
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB06G28940.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_138.32.8e-12153191742
                   HHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHHH CS
        bZIP_1   7 errkqkNReAArrsRqRKkaeieeLee...kvkeLeaeN 42 
                    rr+++NReAAr+sR+RKka+i++Le+   + + Le+e+
  OB06G28940.1 153 LRRLAQNREAARKSRLRKKAYIQQLETgriRLAHLEQEM 191
                   699**********************96444777777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003385.5E-5147206IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.4E-8147192No hitNo description
PROSITE profilePS502178.519149178IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.31E-7151181No hitNo description
PfamPF001704.3E-9152192IPR004827Basic-leucine zipper domain
PROSITE patternPS000360154169IPR004827Basic-leucine zipper domain
PfamPF141444.4E-24229300IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MAYPFTSGMI QASSSLHGSI IRNPQGFDMP SDLDQALFFY FGCQEQDKQS SQEEPHKPLN  60
FVKETLNIFP SQPMHGEPTP TATPSSAPPV AGSSSRRSPP PSAGRPRAVG REPCDRKEGE  120
GSRRGGGNGG GGATAASTSS ELEGPRTPDP RTLRRLAQNR EAARKSRLRK KAYIQQLETG  180
RIRLAHLEQE MQFTRAQGAL WGAGTSPDAA WFSLEYQRWQ EAQHGVIGRL RAAVEEHRPD  240
GELQRRVDEA LSHYGALMGQ KARLAGGDPL HLLTGPWKGA VERCFLWIGG FRPSDLVQVV  300
LRHVEPLTEQ QLAAVHSAQQ AARREEDALD GALQALLRSL ADAVSSDSPA TAPPPWPQTP  360
MIYYHHDHHP AAAAMAASFT GQSCTSSYSL QLAMDKLASL PTFLRQADEL RLRTLHTLRQ  420
MLTVRQAARC FVAVDDYFGR LRALSLFWTT SRQPTTSAAR NGISLA
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB06G28940.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1199090.0AK119909.1 Oryza sativa Japonica Group cDNA clone:002-183-A10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006657133.10.0PREDICTED: transcription factor TGA2-like isoform X1
SwissprotQ69T210.0TGAL8_ORYSJ; Transcription factor TGAL8
TrEMBLJ3MFV00.0J3MFV0_ORYBR; Uncharacterized protein
STRINGOB06G28940.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129722126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06839.18e-77bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]