PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB06G28740.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 415aa    MW: 45180.1 Da    PI: 7.4759
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB06G28740.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.22.9e-05234253120
                   EEETTTTEEESSHHHHHHHH CS
       zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                   ++Cp C k+F+r  n++ H+
  OB06G28740.1 234 FSCPVCYKTFNRYNNMQMHM 253
                   89*****************9 PP

2zf-C2H2140.00015318340123
                   EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                   + C +Cgk F  + + ++H +++
  OB06G28740.1 318 FMCRKCGKAFAVRGDWRTHEKNC 340
                   89*****************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.26E-5230256No hitNo description
Gene3DG3DSA:3.30.160.607.5E-6234253IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.743234261IPR007087Zinc finger, C2H2
SMARTSM003550.45234256IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280236256IPR007087Zinc finger, C2H2
SuperFamilySSF576672.46E-6302338No hitNo description
Gene3DG3DSA:3.30.160.601.2E-5314338IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.808318338IPR007087Zinc finger, C2H2
SMARTSM0035549318338IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009860Biological Processpollen tube growth
GO:0010500Biological Processtransmitting tissue development
GO:1990058Biological Processfruit replum development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MGDPYTNFLR GYHHRSHPLQ FPHRPQPQPY AAASSSFSGL YSSYLHHPPP PPSSPPIREA  60
LPLLSLTPSC SANPPPHHDD HRHGALRRHD QDHEDAEQKG KRDDAYKNKS CSNDDDEQQG  120
AAGDHAAGEV TVALHIGLPS PSPSAAANAG HQEAAAAAAE ASGGGGGSSR MREEGGGGGG  180
DREVAVEEEE EEGGEEGSTT TLPLGCASIG IGKLTKGQYW IPTPSQILIG PTQFSCPVCY  240
KTFNRYNNMQ MHMWGHGSQY RKGPESLRGT QPTAMLRLPC YCCAAGCRNN IDHPRARPLK  300
DFRTLQTHYK RKHGIKPFMC RKCGKAFAVR GDWRTHEKNC GKLWYCACGS DFKHKRSLKD  360
HIRAFGRGHA ACGIDSFDAD DLDLDPDDDP SSDLDHASSS AAASRRPLAD RPLIR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB06G28740.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0711040.0AK071104.1 Oryza sativa Japonica Group cDNA clone:J023078D20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015693889.10.0PREDICTED: LOW QUALITY PROTEIN: zinc finger protein WIP2
SwissprotQ9SVY11e-123ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLJ3MFT00.0J3MFT0_ORYBR; Uncharacterized protein
STRINGOB06G28740.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58638170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-115C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]