PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB06G27780.1
Common NameLOC102709747
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family FAR1
Protein Properties Length: 671aa    MW: 76870.5 Da    PI: 7.0236
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB06G27780.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR172.59.6e-2382173189
          FAR1   1 kfYneYAkevGFsvrkskskkskrng..eitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                   +fYn+YA  +GF +r+++s++++r+g    ++++fvC keg++++++ + ++k++r+r + r gC a+++v ++  +kw++tkl+leH+H +
  OB06G27780.1  82 EFYNAYALCLGFGIRVARSRSERRKGieVLIMKRFVCLKEGHHKKKDAEsNDKKKRKRLSIRDGCPAMMEVVRRGPDKWVITKLVLEHTHVI 173
                   6***************999998666422689***********999988757888999*********************************76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.7E-2182173IPR004330FAR1 DNA binding domain
PfamPF105512.3E-25261352IPR018289MULE transposase domain
PROSITE profilePS509669.248544576IPR007527Zinc finger, SWIM-type
PfamPF044345.1E-7546575IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 671 aa     Download sequence    Send to blast
MEYSSSEGDE LVESYMDVED DTGTSNIDQG TGMMPSEIHG IGPSEGSMLS VDNGQLMAAD  60
GLGNNDEPCL GMEFESDGAA REFYNAYALC LGFGIRVARS RSERRKGIEV LIMKRFVCLK  120
EGHHKKKDAE SNDKKKRKRL SIRDGCPAMM EVVRRGPDKW VITKLVLEHT HVILSPDRVR  180
EVQLRRASGK CAEHENQLQE LRRNVFGDTD AQGLFNYLKR MQSENSGFFY SIQVDSKNCV  240
TNAVWADARA RMSYTYFGDA VYFDTTYSQN EDMLPFAAFT GVNHHGDMIL FGCALVLDRT  300
ESSYAWLFET WLTAMDKRLP FSFTTDEGKA ISAAVAKVFP QCFHRLCRWR ILSRCKKKLS  360
DVYMRFPSLH DELRRCINEC DTEAAFDMFW GTIIDKYDLR ENSWLQSIFD TRHKWVPAYL  420
TSSFFAELTL THRGETVSRF FRNNFSTRVP LDTFITRFDQ HIDSLYVNET QKDLDSFHHE  480
RLLKTTIVLE KQARGIFTNA AFEIFQMELI EALLHYAVKV QQDGPYAKYY VDRDNPPTRH  540
TVFYNVADKK AWCDCCRYAF SAILCRHVLG VFISAGIVML PEPCIMKRWT KRAKTGPELI  600
GHNLENGNCH TDSATSRYND LISYAMKCAE KGAVSAGSFR VAKEVLRKAL MEIKCLGEKL  660
TTDDLQQVDN R
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1124138KKKDAESNDKKKRKR
2132139DKKKRKRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB06G27780.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006656204.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLJ3MFI40.0J3MFI4_ORYBR; Uncharacterized protein
STRINGOB06G27780.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-130FAR1-related sequence 5