PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB06G26400.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | HSF | ||||||||
Protein Properties | Length: 223aa MW: 24699.9 Da PI: 9.1984 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 103.1 | 2.3e-32 | 35 | 126 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl k++e++ed++++ ++sw ++ nsfvv+d++ fa ++Lp +Fkh nf+SF+RQLn+YgF+kv+ ++ weF+++ F g+++ll +i+ OB06G26400.1 35 FLVKTFEMVEDPATDAVVSWGASRNSFVVWDPHAFAARLLPLHFKHANFSSFLRQLNTYGFRKVSADR---------WEFANEDFLGGQRHLLANIR 122 9********************999******************************************99.........******************** PP XXXX CS HSF_DNA-bind 99 rkks 102 r++ OB06G26400.1 123 RRRA 126 *975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 4.5E-54 | 31 | 124 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 1.63E-32 | 31 | 124 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 3.2E-35 | 32 | 124 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 1.2E-28 | 35 | 124 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.3E-17 | 35 | 58 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.3E-17 | 73 | 85 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 74 | 98 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.3E-17 | 86 | 98 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MDDYTTTVKE EAEVVVLDGE EAPVPLPVGV AVAPFLVKTF EMVEDPATDA VVSWGASRNS 60 FVVWDPHAFA ARLLPLHFKH ANFSSFLRQL NTYGFRKVSA DRWEFANEDF LGGQRHLLAN 120 IRRRRATGTG AASTTTTPRA GTGGGGGGEG EVDRLRRDKE ALARELARLR RQQGEARAHL 180 LDMELRVRGT ERRQEQCTAF LARALRNPDV LDKIARHHAA SLA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 1e-23 | 26 | 124 | 14 | 129 | Heat shock factor protein 1 |
5d5v_B | 1e-23 | 26 | 124 | 14 | 129 | Heat shock factor protein 1 |
5d5v_D | 1e-23 | 26 | 124 | 14 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB06G26400.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP005456 | 1e-120 | AP005456.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0513E02. | |||
GenBank | AP014962 | 1e-120 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012614 | 1e-120 | CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006657062.1 | 1e-161 | PREDICTED: putative heat stress transcription factor A-6a | ||||
Swissprot | Q5Z6A4 | 1e-102 | HFA6A_ORYSJ; Putative heat stress transcription factor A-6a | ||||
TrEMBL | J3MF46 | 1e-160 | J3MF46_ORYBR; Uncharacterized protein | ||||
STRING | OB06G26400.1 | 1e-161 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP308 | 37 | 231 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26150.1 | 1e-50 | heat shock transcription factor A2 |