PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB06G21520.1
Common NameLOC102706855
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CPP
Protein Properties Length: 494aa    MW: 54418 Da    PI: 7.1393
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB06G21520.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR43.85.3e-1472112142
           TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                   k+kk+CnCk+s+Clk+YCeCfaag +C+  C+C++C Nk e+
  OB06G21520.1  72 KKKKHCNCKNSQCLKLYCECFAAGLYCDG-CHCKQCGNKVEN 112
                   589**************************.********9875 PP

2TCR50.34.6e-16157196140
           TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                   k++kgC+Ckks ClkkYCeCf+a+  Cs++CkC dCkN e
  OB06G21520.1 157 KHNKGCHCKKSGCLKKYCECFQANILCSKNCKCMDCKNFE 196
                   589***********************************65 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011147.9E-1472112IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163435.9873197IPR005172CRC domain
PfamPF036389.1E-1174109IPR005172CRC domain
SMARTSM011146.0E-19157198IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.4E-12160195IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 494 aa     Download sequence    Send to blast
MMEQQKKMQQ QQQQPEAAPV PEAAEVKALP PQQPQLKPAA PVQPVAHTPR PWPVAFTPLK  60
PVTEMKSAPP TKKKKHCNCK NSQCLKLYCE CFAAGLYCDG CHCKQCGNKV ENESARQEAI  120
NSTKQRNPKA FQPKIENCST ALNLPKDDAG APASLPKHNK GCHCKKSGCL KKYCECFQAN  180
ILCSKNCKCM DCKNFEGSEE LRLITQGDNS SDRNNIQHAA NVALNGAIGS SGYRYSPVRR  240
KRPPEDPLCQ KLNGEGSMMQ PQFQEANHVD SSEITSSTGL EGCYSNYQSR SKIVYRSPLA  300
NTISPTDATG LAKHLVIVCR KATEAFLTTD ENKVDMKVER EIHTNSDSTT NMDQQNEGDF  360
GSCCNNLEDS RPASPGTQAL MCDEQGSTFG TDYRSSFPVA LHDQYTSELN ALQEKAVLTG  420
FRDYLRTLIT RGKINETNWS SEAAMQLDTR RHDGSATILP PLKAVEENEV PDGPESPNAS  480
PSASNYADQK TQEE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A4e-26672064132Protein lin-54 homolog
5fd3_B4e-26672064132Protein lin-54 homolog
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB06G21520.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8362560.0CT836256.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA111J17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006656939.20.0PREDICTED: protein tesmin/TSO1-like CXC 7 isoform X2
TrEMBLJ3MDQ80.0J3MDQ8_ORYBR; Uncharacterized protein
STRINGOB06G21520.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57552653
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.14e-89Tesmin/TSO1-like CXC domain-containing protein