PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB06G21520.1 | ||||||||
Common Name | LOC102706855 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | CPP | ||||||||
Protein Properties | Length: 494aa MW: 54418 Da PI: 7.1393 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 43.8 | 5.3e-14 | 72 | 112 | 1 | 42 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 k+kk+CnCk+s+Clk+YCeCfaag +C+ C+C++C Nk e+ OB06G21520.1 72 KKKKHCNCKNSQCLKLYCECFAAGLYCDG-CHCKQCGNKVEN 112 589**************************.********9875 PP | |||||||
2 | TCR | 50.3 | 4.6e-16 | 157 | 196 | 1 | 40 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 k++kgC+Ckks ClkkYCeCf+a+ Cs++CkC dCkN e OB06G21520.1 157 KHNKGCHCKKSGCLKKYCECFQANILCSKNCKCMDCKNFE 196 589***********************************65 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 7.9E-14 | 72 | 112 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 35.98 | 73 | 197 | IPR005172 | CRC domain |
Pfam | PF03638 | 9.1E-11 | 74 | 109 | IPR005172 | CRC domain |
SMART | SM01114 | 6.0E-19 | 157 | 198 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 1.4E-12 | 160 | 195 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 494 aa Download sequence Send to blast |
MMEQQKKMQQ QQQQPEAAPV PEAAEVKALP PQQPQLKPAA PVQPVAHTPR PWPVAFTPLK 60 PVTEMKSAPP TKKKKHCNCK NSQCLKLYCE CFAAGLYCDG CHCKQCGNKV ENESARQEAI 120 NSTKQRNPKA FQPKIENCST ALNLPKDDAG APASLPKHNK GCHCKKSGCL KKYCECFQAN 180 ILCSKNCKCM DCKNFEGSEE LRLITQGDNS SDRNNIQHAA NVALNGAIGS SGYRYSPVRR 240 KRPPEDPLCQ KLNGEGSMMQ PQFQEANHVD SSEITSSTGL EGCYSNYQSR SKIVYRSPLA 300 NTISPTDATG LAKHLVIVCR KATEAFLTTD ENKVDMKVER EIHTNSDSTT NMDQQNEGDF 360 GSCCNNLEDS RPASPGTQAL MCDEQGSTFG TDYRSSFPVA LHDQYTSELN ALQEKAVLTG 420 FRDYLRTLIT RGKINETNWS SEAAMQLDTR RHDGSATILP PLKAVEENEV PDGPESPNAS 480 PSASNYADQK TQEE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 4e-26 | 67 | 206 | 4 | 132 | Protein lin-54 homolog |
5fd3_B | 4e-26 | 67 | 206 | 4 | 132 | Protein lin-54 homolog |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB06G21520.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT836256 | 0.0 | CT836256.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA111J17, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006656939.2 | 0.0 | PREDICTED: protein tesmin/TSO1-like CXC 7 isoform X2 | ||||
TrEMBL | J3MDQ8 | 0.0 | J3MDQ8_ORYBR; Uncharacterized protein | ||||
STRING | OB06G21520.1 | 0.0 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5755 | 26 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29000.1 | 4e-89 | Tesmin/TSO1-like CXC domain-containing protein |
Link Out ? help Back to Top | |
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Entrez Gene | 102706855 |