PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB06G20500.1
Common NameLOC102704709
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CO-like
Protein Properties Length: 407aa    MW: 43990 Da    PI: 5.0586
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB06G20500.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.88.1e-07445540
      zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                   C+ ++e++   +C+++   lC +C  + H+       Ht++
  OB06G20500.1  4 LCDFCGEQRSMVYCRSDAASLCLSCDRNVHSAnalsrrHTRT 45
                  6*****************************657888889876 PP

2zf-B_box24.36.5e-084789541
      zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                   C+++ ++++   C   +  lC++C  ++H+       H++++
  OB06G20500.1 47 LCDRCASQPAMVRCLVENASLCQNCDWNGHSAgssaagHKRQT 89
                  7*****************************6688899999876 PP

3CCT64.92.4e-22350393144
           CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                   R+ a++RYkeK+k+RkF+KkirY+sRKa+A+ R+RvKGrFvk+ 
  OB06G20500.1 350 RDDAITRYKEKKKRRKFDKKIRYASRKARADVRKRVKGRFVKAG 393
                   899**************************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.94147IPR000315B-box-type zinc finger
SMARTSM003361.0E-10147IPR000315B-box-type zinc finger
CDDcd000211.10E-7447No hitNo description
PROSITE profilePS501198.8594390IPR000315B-box-type zinc finger
PfamPF006432.5E-54790IPR000315B-box-type zinc finger
CDDcd000211.39E-54790No hitNo description
SMARTSM003360.274890IPR000315B-box-type zinc finger
PROSITE profilePS5101715.388350392IPR010402CCT domain
PfamPF062033.8E-17350392IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MGALCDFCGE QRSMVYCRSD AASLCLSCDR NVHSANALSR RHTRTLLCDR CASQPAMVRC  60
LVENASLCQN CDWNGHSAGS SAAGHKRQTI NCYSGCPSSS ELSKIWSFVS DIPNVASEPN  120
CEQGISMMSI TDSGISNQDN AAGDSSLLDI ASATRMSDLD TADKLKSMIG SSSEAGVNLL  180
PHATDQTAGS VDSTTAKVPY TAEKDMFSKD SIYGDFCVDD VDLSFENYEE LFGTSHIQTE  240
QLFDDAGIDS YFESKEMPAG NCDEPTLMHP LTNNAVSADS GMSIPGAKGD SSLCIPVRQV  300
RSSISLSFSG LTGESSAGDY QDCGVSSVLL MGEPPWHPPG PEGPLAGATR DDAITRYKEK  360
KKRRKFDKKI RYASRKARAD VRKRVKGRFV KAGEAYDYDP LCETRSY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1359363KKKRR
2359364KKKRRK
3360364KKRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB06G20500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ8588020.0HQ858802.1 Oryza sativa Indica Group isolate UT1180 C2C2-CO-like transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006656034.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 9-like isoform X2
SwissprotQ9SSE51e-129COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
TrEMBLJ3MDF60.0J3MDF6_ORYBR; Uncharacterized protein
STRINGOB06G20500.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20793788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48250.18e-96B-box type zinc finger protein with CCT domain