PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB06G19820.1
Common NameLOC102718370
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 420aa    MW: 45625.9 Da    PI: 6.5606
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB06G19820.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.11.8e-09252300355
                   HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  OB06G19820.1 252 NSHSLAERVRREKISERMKYLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 300
                   58*************************9....556*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.06E-17247317IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.79E-11247304No hitNo description
PROSITE profilePS5088815.516249299IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.8E-17250314IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-6252300IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.4E-10255305IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MNEKDTTDFE KSEASEHTQT LSFHGAMFLP EAQIASSANA LTTMANPFPI HPGLWNPPAQ  60
SLGLGETSFS SLLGMLSAGV PPSAATSGFL DSATGFSSYN GGNLGAMINH SFPSIQHLGD  120
LGNGVEIEAI ASEGCKNVSQ TSEKQQGDAE MTHDVDSPSK ELSKPECTGG TVHDEGTRVS  180
CSKKRKRSGQ DHGVKHVEGG EEPQKNENDE KDEPKRSSVA SGKSSGKQAK DNAGSPKEEY  240
IHVRARRGQA TNSHSLAERV RREKISERMK YLQDLVPGCS KVTGKAVMLD EIINYVQSLQ  300
RQVEFLSMKL ASVNPTLDFN IDRILSKDIF QSQGAIASSV FGFLPGIVYP QLHQPKYMQV  360
KMPSIVNSTD AFRRVTHAPL GTNSALKETK HQMPNNLNGE FQDVIEIPFT HDHHGLSDRP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1182187KKRKRS
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB06G19820.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ4071070.0GQ407107.1 Oryza brachyantha chromosome 6 clone BAC a0030H09, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006655999.10.0PREDICTED: transcription factor bHLH49
RefseqXP_015694092.10.0PREDICTED: transcription factor bHLH49
RefseqXP_015694093.10.0PREDICTED: transcription factor bHLH49
TrEMBLJ3MD880.0J3MD88_ORYBR; Uncharacterized protein
STRINGOB06G19820.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP146241923
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.31e-68bHLH family protein