PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB06G17320.1 | ||||||||
Common Name | LOC102719395 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB | ||||||||
Protein Properties | Length: 320aa MW: 35891.8 Da PI: 6.893 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.5 | 1.3e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEde+l +++++G g+W+ ++ g++R++k+c++rw +yl OB06G17320.1 14 KGPWTPEEDEKLMGYIQKHGHGSWRVLPKLAGLNRCGKSCRLRWTNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 54.6 | 2.5e-17 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ eE++ +++++ lG++ W++Ia++++ gRt++++k++w+++l OB06G17320.1 67 RGSFSREEEQTILQLHSILGNK-WSAIAKHLP-GRTDNEIKNFWNTHL 112 899*******************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.8E-26 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.396 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.77E-32 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.8E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.0E-16 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.53E-10 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 27.3 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-27 | 65 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.7E-17 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.6E-16 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.58E-13 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 320 aa Download sequence Send to blast |
MGRSPCCDEN GLKKGPWTPE EDEKLMGYIQ KHGHGSWRVL PKLAGLNRCG KSCRLRWTNY 60 LKPDIKRGSF SREEEQTILQ LHSILGNKWS AIAKHLPGRT DNEIKNFWNT HLRKKLIKMG 120 IDPMTHRPRT DLIQSLPQLI ALASLRQIIE QRPWDGHIEG LQTVAVQAAK LEYMQSLLHS 180 AVSIVTSPTN SSNRLNTCTT ELEQTNLLSP PQVPSSSVHE LAGQVPHSHM PSTSFDQQIG 240 KTNLFSNNIM NGNEWCSIEA ENSSQKSLLV PENSLPPLTD MPVPNFCNTI STPNCDGSNS 300 ILLPSWSEIL LDEELMDEFA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 2e-30 | 12 | 116 | 2 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 1e-30 | 12 | 116 | 2 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 1e-30 | 12 | 116 | 2 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00180 | DAP | Transfer from AT1G34670 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB06G17320.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012614 | 0.0 | CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006655921.1 | 0.0 | PREDICTED: myb-related protein 330-like | ||||
Swissprot | Q9S9Z2 | 2e-99 | MYB93_ARATH; Transcription factor MYB93 | ||||
TrEMBL | J3MCI8 | 0.0 | J3MCI8_ORYBR; Uncharacterized protein | ||||
STRING | OB06G17320.1 | 0.0 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1126 | 37 | 132 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34670.1 | 1e-101 | myb domain protein 93 |
Link Out ? help Back to Top | |
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Entrez Gene | 102719395 |
Publications ? help Back to Top | |||
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