PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB06G16110.1
Common NameLOC102711354
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 270aa    MW: 28581.6 Da    PI: 6.7406
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB06G16110.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.54.6e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT  Ed  l+ ++k +G g W+ ++++ g++R++k+c++rw++yl
     OB06G16110.1 14 RGAWTSKEDNMLASYIKAHGEGKWREVPQRAGLRRCGKSCRLRWLNYL 61
                     89********************************************97 PP
2Myb_DNA-binding52.21.4e-1667111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg+ + +E+el+v+++++lG++ W++Ia +++ gRt++++k++w++ 
     OB06G16110.1  67 RGNISDDEEELIVRLHTLLGNR-WSLIAGRLP-GRTDNEIKNYWNST 111
                      7899******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-22664IPR009057Homeodomain-like
PROSITE profilePS5129416.023961IPR017930Myb domain
SuperFamilySSF466899.38E-2811108IPR009057Homeodomain-like
SMARTSM007172.8E-121363IPR001005SANT/Myb domain
PfamPF002498.2E-151461IPR001005SANT/Myb domain
CDDcd001672.44E-91661No hitNo description
PROSITE profilePS5129425.39262116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-2365115IPR009057Homeodomain-like
SMARTSM007171.5E-1466114IPR001005SANT/Myb domain
PfamPF002491.7E-1367111IPR001005SANT/Myb domain
CDDcd001678.63E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MGRRACCAKE GMKRGAWTSK EDNMLASYIK AHGEGKWREV PQRAGLRRCG KSCRLRWLNY  60
LRPNIKRGNI SDDEEELIVR LHTLLGNRWS LIAGRLPGRT DNEIKNYWNS TLSRKVGSAA  120
AGVGGSPRGS GAADSAGARA TDAASSSSVV PGQQQAAASG ADTDNATATT TTTTVWAPKA  180
VRCTRGFFFH RETLTAPTPP LAEAAPTGEG DGDGDGDGDD CSGSSSVATT TSSTFPAVEP  240
CSIYAGDDWM DDVRALASFL DSDDAWNLCA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-26121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtControls the expression of genes involved in anthocyanin biosynthesis. Regulates the expression of at least 3 structural genes: chalcone synthase, dihydroflavonol reductase and flavonol O(3) glucosyltransferase. C1 acts as a trans-acting factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB06G16110.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006655895.10.0PREDICTED: anthocyanin regulatory C1 protein-like
SwissprotP102901e-87MYBC_MAIZE; Anthocyanin regulatory C1 protein
TrEMBLJ3MC670.0J3MC67_ORYBR; Uncharacterized protein
STRINGOB06G16110.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11637448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16720.14e-58myb domain protein 7
Publications ? help Back to Top
  1. Chen B,Wang X,Hu Y,Wang Y,Lin Z
    Ectopic expression of a c1-I allele from maize inhibits pigment formation in the flower of transgenic tobacco.
    Mol. Biotechnol., 2004. 26(3): p. 187-92
    [PMID:15004287]
  2. Paz-Ares J,Ghosal D,Saedler H
    Molecular analysis of the C1-I allele from Zea mays: a dominant mutant of the regulatory C1 locus.
    EMBO J., 1990. 9(2): p. 315-21
    [PMID:2303027]
  3. Cone KC,Burr FA,Burr B
    Molecular analysis of the maize anthocyanin regulatory locus C1.
    Proc. Natl. Acad. Sci. U.S.A., 1986. 83(24): p. 9631-5
    [PMID:3025847]
  4. Paz-Ares J,Ghosal D,Wienand U,Peterson PA,Saedler H
    The regulatory c1 locus of Zea mays encodes a protein with homology to myb proto-oncogene products and with structural similarities to transcriptional activators.
    EMBO J., 1987. 6(12): p. 3553-8
    [PMID:3428265]
  5. Scheffler B, et al.
    Molecular analysis of C1 alleles in Zea mays defines regions involved in the expression of this regulatory gene.
    Mol. Gen. Genet., 1994. 242(1): p. 40-8
    [PMID:7904044]
  6. Franken P,Schrell S,Peterson PA,Saedler H,Wienand U
    Molecular analysis of protein domain function encoded by the myb-homologous maize genes C1, Zm 1 and Zm 38.
    Plant J., 1994. 6(1): p. 21-30
    [PMID:7920701]
  7. Singer T,Gierl A,Peterson PA
    Three new dominant C1 suppressor alleles in Zea mays.
    Genet. Res., 1998. 71(2): p. 127-32
    [PMID:9717435]